BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0152800 Os12g0152800|AK071572
         (68 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os12g0152800  Conserved hypothetical protein                      137   2e-33
Os03g0424600  Similar to Transposase (Fragment)                    89   9e-19

>Os12g0152800 Conserved hypothetical protein
          Length = 68

 Score =  137 bits (345), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 68/68 (100%), Positives = 68/68 (100%)

Query: 1  ITDIKSFDISGKLPCEFYAIWVLRNLPSSGACIVSQLISVFPTRVRLLPKFVPSFAYFCS 60
          ITDIKSFDISGKLPCEFYAIWVLRNLPSSGACIVSQLISVFPTRVRLLPKFVPSFAYFCS
Sbjct: 1  ITDIKSFDISGKLPCEFYAIWVLRNLPSSGACIVSQLISVFPTRVRLLPKFVPSFAYFCS 60

Query: 61 YLKVGGLS 68
          YLKVGGLS
Sbjct: 61 YLKVGGLS 68



>Os03g0424600 Similar to Transposase (Fragment)
          Length = 544

 Score = 88.6 bits (218), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 45/55 (81%), Positives = 45/55 (81%), Gaps = 5/55 (9%)

Query: 3   DIKSFDISGKLPCEFYAIWVLRNLPS-----SGACIVSQLISVFPTRVRLLPKFV 52
           DIKSFDISGKLPCEFYAIWVLRN  S     SGAC VSQLISVFPT VRL PKFV
Sbjct: 472 DIKSFDISGKLPCEFYAIWVLRNFASSGAVVSGACFVSQLISVFPTHVRLHPKFV 526



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.329    0.144    0.460 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,322,464
Number of extensions: 74082
Number of successful extensions: 161
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 160
Number of HSP's successfully gapped: 2
Length of query: 68
Length of database: 17,035,801
Length adjustment: 40
Effective length of query: 28
Effective length of database: 14,947,241
Effective search space: 418522748
Effective search space used: 418522748
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 149 (62.0 bits)