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Os03g0424600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Transposase (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.62 (0.0183) R2 : 0.00851
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0764 (0.0386) R2dN8 : 0.011 R2N8 : 0.00851
σ : 0.346
deviance : 54.8
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
41.79 0.304 8.62 0.317 0.205 -0.412 0.637 -0.0857 0.0939 20.5 19.69 84 -- --
41.61 0.3 8.62 0.305 0.219 -0.413 0.593 -- 0.0932 20.7 17.66 80 -- --
42.59 0.304 8.62 0.291 0.215 -0.412 -- 0.193 0.0895 20.4 17.77 82 -- --
42.78 0.305 8.62 0.298 0.214 -0.404 -- -- 0.0923 20.7 17.7 79 -- --
44.8 0.312 8.62 0.273 -- -0.342 -- 0.168 0.0931 -- 17.76 89 -- --
47.59 0.323 8.61 0.316 0.291 -- 0.0125 -- 0.118 15.4 -- -- -- --
47.59 0.323 8.61 0.317 0.291 -- -- -- 0.118 15.4 -- -- -- --
44.92 0.312 8.61 0.281 -- -0.377 -- -- 0.0799 -- 21.93 93 -- --
44.99 0.312 8.62 -- 0.206 -0.395 -- -- 0.0801 20.8 17.71 79 -- --
52.36 0.338 8.61 0.304 -- -- -- -- 0.11 -- -- -- -- --
50.24 0.332 8.62 -- 0.285 -- -- -- 0.0826 15.4 -- -- -- --
46.92 0.319 8.62 -- -- -0.375 -- -- 0.0589 -- 21.73 91 -- --
54.8 0.346 8.62 -- -- -- -- -- 0.0764 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 32.71 temperature 10.0 270 > th dose dependent rect. 1 6
4 33.03 temperature 10.0 270 > th dose dependent rect. 3 3
8 33.18 humidity 80.0 270 > th dose independent rect. 1 6
18 33.78 radiation 10.0 270 < th dose independent rect. 2 5
19 33.78 humidity 60.0 270 > th dose dependent rect. 2 5
21 33.81 humidity 80.0 270 > th dose independent rect. 3 2
26 33.85 humidity 70.0 270 > th dose dependent rect. 3 2
32 33.95 radiation 10.0 270 < th dose dependent rect. 3 3
33 33.96 radiation 10.0 270 < th dose independent rect. 3 3
37 34.03 radiation 20.0 270 < th dose dependent rect. 2 5
38 34.05 wind 9.0 270 < th dose independent rect. 5 22
39 34.05 temperature 10.0 10 > th dose dependent rect. 2 7
40 34.07 wind 9.0 270 < th dose independent rect. 7 18
44 34.10 temperature 20.0 90 > th dose independent rect. 4 4
48 34.13 atmosphere 995.0 90 > th dose dependent rect. 8 19
50 34.15 precipitation 0.1 90 < th dose independent rect. 3 5
52 34.15 precipitation 0.1 90 < th dose dependent rect. 3 5
56 34.18 wind 7.0 90 < th dose independent rect. 3 5
61 34.23 radiation 40.0 90 < th dose independent rect. 3 5
65 34.24 temperature 10.0 90 > th dose independent rect. 3 5
67 34.24 temperature 30.0 90 < th dose independent rect. 3 5
68 34.24 humidity 50.0 90 > th dose independent rect. 3 5
70 34.24 atmosphere 995.0 90 > th dose independent rect. 3 5
71 34.24 atmosphere 1015.0 90 < th dose independent rect. 3 5
72 34.24 temperature 10.0 90 > th dose independent rect. 8 19
75 34.28 precipitation 0.1 270 < th dose independent rect. 1 6
76 34.28 precipitation 0.1 270 < th dose dependent rect. 1 6
79 34.29 atmosphere 995.0 90 > th dose independent rect. 8 19
84 34.30 wind 7.0 270 < th dose independent rect. 1 6
86 34.30 temperature 10.0 270 > th dose independent rect. 1 6
88 34.30 temperature 30.0 270 < th dose independent rect. 1 6
89 34.30 humidity 50.0 270 > th dose independent rect. 1 6
91 34.30 atmosphere 995.0 270 > th dose independent rect. 1 6
92 34.30 atmosphere 1015.0 270 < th dose independent rect. 1 6
101 34.32 wind 9.0 270 < th dose independent rect. 3 2
102 34.32 temperature 10.0 270 > th dose independent rect. 3 2
104 34.32 temperature 30.0 270 < th dose independent rect. 3 2
105 34.32 humidity 50.0 270 > th dose independent rect. 3 2
108 34.32 atmosphere 995.0 270 > th dose independent rect. 3 2
109 34.32 atmosphere 1010.0 270 < th dose independent rect. 3 2
114 34.32 precipitation 0.1 270 < th dose independent rect. 3 2
115 34.32 temperature 10.0 270 > th dose independent rect. 5 22
118 34.32 precipitation 0.1 270 < th dose dependent rect. 3 2
125 34.37 precipitation 0.1 90 < th dose independent rect. 8 19
126 34.37 precipitation 0.1 90 < th dose dependent rect. 8 19
137 34.46 precipitation 0.1 90 < th dose independent rect. 8 7
138 34.46 precipitation 0.1 90 < th dose dependent rect. 8 7
142 34.49 wind 9.0 90 < th dose dependent rect. 3 5
147 34.51 temperature 10.0 90 > th dose independent rect. 8 7
148 34.51 atmosphere 995.0 90 > th dose independent rect. 8 7
149 34.51 atmosphere 1015.0 90 < th dose independent rect. 8 7
151 34.51 temperature 10.0 90 > th dose independent rect. 15 17
207 34.62 atmosphere 995.0 10 > th dose dependent rect. 9 19
209 34.63 radiation 40.0 90 < th dose independent rect. 13 19
213 34.65 precipitation 0.1 90 < th dose independent rect. 15 17
216 34.65 precipitation 0.1 90 < th dose dependent rect. 15 17
219 34.71 radiation 40.0 90 < th dose independent rect. 15 17
237 34.81 humidity 50.0 90 > th dose independent rect. 8 7
253 34.89 atmosphere 1015.0 90 < th dose independent rect. 15 17
255 34.89 temperature 10.0 10 > th dose dependent rect. 15 18
258 34.91 wind 1.0 90 > th dose independent rect. 8 7
259 34.91 radiation 1.0 90 > th dose independent rect. 8 7
263 34.92 wind 9.0 90 < th dose independent rect. 8 7
264 34.92 temperature 10.0 90 > th dose dependent rect. 15 17
266 34.94 precipitation 0.1 270 < th dose independent rect. 5 22
267 34.94 precipitation 0.1 270 < th dose dependent rect. 5 22
276 35.01 humidity 50.0 270 > th dose independent rect. 7 18
281 35.02 wind 9.0 270 < th dose dependent rect. 3 3
287 35.04 wind 9.0 90 < th dose independent rect. 15 17
306 35.13 wind 7.0 10 < th dose independent rect. 2 7
312 35.15 temperature 10.0 10 > th dose independent rect. 8 7
314 35.15 atmosphere 995.0 10 > th dose independent rect. 8 7
315 35.15 atmosphere 1015.0 10 < th dose independent rect. 8 7
316 35.15 precipitation 0.1 10 < th dose independent rect. 8 7
317 35.15 temperature 10.0 10 > th dose independent rect. 15 17
318 35.15 precipitation 0.1 10 < th dose dependent rect. 8 7
327 35.17 precipitation 0.1 10 < th dose independent rect. 2 7
330 35.17 precipitation 0.1 10 < th dose dependent rect. 2 7
333 35.18 radiation 1.0 10 > th dose independent rect. 8 7
335 35.19 radiation 40.0 90 < th dose dependent rect. 13 19
338 35.20 wind 1.0 90 > th dose independent rect. 8 19
358 35.22 radiation 40.0 10 < th dose independent rect. 15 17
361 35.23 wind 7.0 10 < th dose independent rect. 4 5
368 35.25 temperature 10.0 10 > th dose independent rect. 4 5
370 35.25 temperature 30.0 10 < th dose independent rect. 4 5
371 35.25 humidity 50.0 10 > th dose independent rect. 4 5
373 35.25 atmosphere 995.0 10 > th dose independent rect. 4 5
374 35.25 atmosphere 1015.0 10 < th dose independent rect. 4 5
377 35.25 temperature 10.0 10 > th dose independent rect. 9 19
392 35.27 temperature 15.0 270 > th dose independent rect. 2 16
397 35.28 temperature 10.0 1440 > th dose independent rect. 9 7
401 35.28 temperature 10.0 1440 > th dose independent rect. 16 17
404 35.28 precipitation 0.1 10 < th dose independent rect. 9 17
407 35.28 atmosphere 995.0 10 > th dose independent rect. 9 19
410 35.28 precipitation 0.1 10 < th dose dependent rect. 9 17
412 35.29 precipitation 0.1 10 < th dose independent rect. 4 5
415 35.29 precipitation 0.1 10 < th dose dependent rect. 4 5
418 35.30 radiation 40.0 10 < th dose independent rect. 4 5
431 35.30 wind 9.0 10 < th dose dependent rect. 4 5
442 35.31 atmosphere 1015.0 10 < th dose independent rect. 15 18
449 35.32 atmosphere 995.0 90 > th dose independent rect. 15 17
450 35.32 precipitation 0.1 10 < th dose independent rect. 15 17
451 35.32 precipitation 0.1 10 < th dose dependent rect. 15 17
453 35.33 temperature 10.0 10 > th dose independent rect. 2 7
455 35.33 temperature 30.0 10 < th dose independent rect. 2 7
456 35.33 humidity 50.0 10 > th dose independent rect. 2 7
458 35.33 atmosphere 995.0 10 > th dose independent rect. 2 7
459 35.33 atmosphere 1015.0 10 < th dose independent rect. 2 7
463 35.33 temperature 10.0 10 > th dose independent rect. 9 17
467 35.33 wind 9.0 10 < th dose independent rect. 9 19
472 35.34 atmosphere 995.0 10 > th dose independent rect. 9 17
525 35.44 radiation 40.0 10 < th dose independent rect. 2 7
528 35.44 precipitation 0.1 10 < th dose independent rect. 9 19
531 35.44 precipitation 0.1 10 < th dose dependent rect. 9 19
611 35.55 humidity 50.0 10 > th dose independent rect. 15 17
617 35.56 humidity 50.0 270 > th dose independent rect. 6 7
624 35.56 atmosphere 995.0 90 > th dose dependent rect. 3 5
632 35.58 wind 7.0 270 < th dose independent rect. 18 8
633 35.58 wind 9.0 10 < th dose independent rect. 9 17
665 35.62 wind 9.0 10 < th dose independent rect. 8 7
666 35.62 temperature 10.0 1440 > th dose independent rect. 3 7
669 35.62 atmosphere 995.0 1440 > th dose independent rect. 3 7
671 35.62 temperature 10.0 1440 > th dose independent rect. 10 17
683 35.63 atmosphere 1015.0 270 < th dose dependent rect. 11 9
709 35.71 temperature 10.0 270 > th dose independent rect. 6 7
710 35.71 atmosphere 995.0 270 > th dose independent rect. 6 7
711 35.71 atmosphere 1015.0 270 < th dose independent rect. 6 7
725 35.74 precipitation 0.1 270 < th dose independent rect. 6 7
728 35.74 precipitation 0.1 270 < th dose dependent rect. 6 7
740 35.75 radiation 1.0 270 < th dose dependent rect. 18 8
766 35.81 atmosphere 995.0 270 > th dose independent rect. 18 8
772 35.82 wind 9.0 270 < th dose independent rect. 6 7
831 35.87 radiation 1.0 270 < th dose independent rect. 18 8
858 35.89 temperature 10.0 270 > th dose independent rect. 18 8
859 35.89 humidity 50.0 270 > th dose independent rect. 18 8
864 35.89 atmosphere 1015.0 270 < th dose independent rect. 2 16
865 35.89 precipitation 0.1 270 < th dose independent rect. 2 16
867 35.89 precipitation 0.1 270 < th dose dependent rect. 2 16
885 35.93 humidity 50.0 90 > th dose independent rect. 15 17
897 35.95 atmosphere 995.0 10 > th dose independent rect. 15 17
900 35.95 atmosphere 995.0 270 > th dose dependent rect. 3 2
939 36.04 wind 1.0 270 > th dose independent rect. 3 2
984 36.12 wind 1.0 270 > th dose independent rect. 1 6
997 36.13 atmosphere 1015.0 1440 < th dose independent rect. 4 6