Os12g0152800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os12g0152800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 109.67 | 0.492 | 8.78 | -1.66 | 3.9 | -1.03 | -0.716 | 1.05 | -0.869 | 7.14 | 19.98 | 1301 | -- | -- |
| 112.1 | 0.493 | 8.77 | -1.58 | 3.9 | -1 | -0.536 | -- | -0.864 | 7.14 | 19.97 | 1300 | -- | -- |
| 111.01 | 0.491 | 8.78 | -1.66 | 3.9 | -1.02 | -- | 0.943 | -0.869 | 7.14 | 19.98 | 1300 | -- | -- |
| 112.98 | 0.495 | 8.77 | -1.6 | 3.89 | -0.996 | -- | -- | -0.85 | 7.14 | 19.98 | 1300 | -- | -- |
| 878.49 | 1.38 | 8.85 | -1.5 | -- | -0.879 | -- | 0.92 | -0.729 | -- | 27.17 | 1434 | -- | -- |
| 146.52 | 0.567 | 8.73 | -1.51 | 3.82 | -- | -0.66 | -- | -0.631 | 6.94 | -- | -- | -- | -- |
| 147.65 | 0.569 | 8.73 | -1.52 | 3.82 | -- | -- | -- | -0.629 | 6.95 | -- | -- | -- | -- |
| 878.2 | 1.38 | 8.85 | -1.6 | -- | -0.948 | -- | -- | -0.763 | -- | 27.2 | 1433 | -- | -- |
| 181.95 | 0.628 | 8.77 | -- | 3.89 | -0.99 | -- | -- | -0.848 | 7.14 | 19.99 | 1303 | -- | -- |
| 913.62 | 1.41 | 8.81 | -1.44 | -- | -- | -- | -- | -0.557 | -- | -- | -- | -- | -- |
| 208.4 | 0.675 | 8.69 | -- | 3.8 | -- | -- | -- | -0.46 | 6.97 | -- | -- | -- | -- |
| 922.49 | 1.41 | 8.87 | -- | -- | -1.46 | -- | -- | -0.833 | -- | 8.5 | 7272 | -- | -- |
| 968.24 | 1.45 | 8.77 | -- | -- | -- | -- | -- | -0.398 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 111.70 | temperature | 20 | 90 | > th | dose independent | rect. | 20 | 7 |
| 3 | 112.48 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 4 | 112.52 | radiation | 40 | 1440 | < th | dose dependent | rect. | 11 | 2 |
| 8 | 113.00 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 22 |
| 9 | 113.24 | radiation | 20 | 1440 | < th | dose independent | rect. | 7 | 7 |
| 13 | 113.49 | radiation | 20 | 1440 | < th | dose independent | rect. | 7 | 9 |
| 14 | 113.49 | radiation | 20 | 1440 | < th | dose independent | rect. | 21 | 17 |
| 15 | 113.50 | radiation | 20 | 1440 | < th | dose independent | rect. | 23 | 15 |
| 22 | 113.52 | radiation | 20 | 1440 | < th | dose independent | rect. | 15 | 23 |
| 30 | 113.66 | radiation | 20 | 1440 | < th | dose independent | sin | 1 | NA |
| 50 | 113.74 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 5 |
| 54 | 113.77 | radiation | 1 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 56 | 113.79 | radiation | 20 | 1440 | < th | dose independent | rect. | 7 | 21 |
| 68 | 113.85 | radiation | 20 | 1440 | < th | dose independent | rect. | 7 | 15 |
| 125 | 114.03 | radiation | 20 | 1440 | < th | dose independent | no | NA | NA |
| 206 | 114.28 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 17 |
| 220 | 114.38 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 11 |
| 230 | 114.44 | temperature | 20 | 10 | > th | dose independent | rect. | 20 | 8 |
| 284 | 115.15 | radiation | 30 | 1440 | < th | dose dependent | rect. | 8 | 6 |
| 302 | 115.53 | temperature | 15 | 90 | > th | dose dependent | rect. | 20 | 7 |
| 334 | 116.17 | radiation | 10 | 1440 | > th | dose dependent | rect. | 11 | 22 |
| 343 | 116.21 | radiation | 1 | 1440 | > th | dose dependent | rect. | 8 | 6 |
| 409 | 116.49 | radiation | 40 | 1440 | < th | dose dependent | rect. | 8 | 20 |
| 494 | 116.57 | radiation | 30 | 1440 | < th | dose dependent | sin | 0 | NA |
| 576 | 116.65 | radiation | 30 | 1440 | < th | dose dependent | rect. | 17 | 21 |
| 645 | 116.77 | radiation | 40 | 1440 | < th | dose dependent | rect. | 21 | 17 |
| 650 | 116.78 | radiation | 40 | 1440 | < th | dose dependent | rect. | 23 | 15 |
| 712 | 116.86 | radiation | 1 | 1440 | > th | dose dependent | sin | 23 | NA |
| 727 | 116.88 | radiation | 1 | 1440 | > th | dose dependent | rect. | 8 | 11 |
| 790 | 116.95 | radiation | 10 | 1440 | > th | dose dependent | rect. | 17 | 21 |
| 910 | 117.06 | radiation | 40 | 1440 | < th | dose dependent | rect. | 10 | 23 |