BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0152700 Os12g0152700|AK099473
         (279 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os12g0152700  Amino acid-binding ACT domain containing protein    498   e-141
Os08g0242700  Hypothetical protein                                111   5e-25

>Os12g0152700 Amino acid-binding ACT domain containing protein
          Length = 279

 Score =  498 bits (1283), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 247/261 (94%), Positives = 247/261 (94%)

Query: 19  SPYYSARVSPGFLRLHDFPRSVGLAATAAPRIFCQSINSADVLGASSTTSDDAIPQPVVL 78
           SPYYSARVSPGFLRLHDFPRSVGLAATAAPRIFCQSINSADVLGASSTTSDDAIPQPVVL
Sbjct: 19  SPYYSARVSPGFLRLHDFPRSVGLAATAAPRIFCQSINSADVLGASSTTSDDAIPQPVVL 78

Query: 79  IDQDSDRDATIVQLSFGDRLGALLDTMKALKDLGLDVTKGSVSTESAVTQTKFHIMRSGR 138
           IDQDSDRDATIVQLSFGDRLGALLDTMKALKDLGLDVTKGSVSTESAVTQTKFHIMRSGR
Sbjct: 79  IDQDSDRDATIVQLSFGDRLGALLDTMKALKDLGLDVTKGSVSTESAVTQTKFHIMRSGR 138

Query: 139 KVEDPDTLEKIRLTVINNLLQYHPESSENLAMGEFFGIKAPEKKXXXXXXXXXXXXXXGP 198
           KVEDPDTLEKIRLTVINNLLQYHPESSENLAMGEFFGIKAPEKK              GP
Sbjct: 139 KVEDPDTLEKIRLTVINNLLQYHPESSENLAMGEFFGIKAPEKKVDVDVVTHVIVEDDGP 198

Query: 199 KRSMLYIETADRPGLLLEIVKIITDVNVDVESAEIDTEGLVAKDKFHVSYRGAKLNSSLS 258
           KRSMLYIETADRPGLLLEIVKIITDVNVDVESAEIDTEGLVAKDKFHVSYRGAKLNSSLS
Sbjct: 199 KRSMLYIETADRPGLLLEIVKIITDVNVDVESAEIDTEGLVAKDKFHVSYRGAKLNSSLS 258

Query: 259 QVLVNCLRYYLRRPETDEDSY 279
           QVLVNCLRYYLRRPETDEDSY
Sbjct: 259 QVLVNCLRYYLRRPETDEDSY 279



>Os08g0242700 Hypothetical protein
          Length = 106

 Score =  111 bits (278), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 52/79 (65%), Positives = 64/79 (81%)

Query: 201 SMLYIETADRPGLLLEIVKIITDVNVDVESAEIDTEGLVAKDKFHVSYRGAKLNSSLSQV 260
           S+L +ETADRPGLL+++VKII D+N+ V+S E DTEGL+AK KFHVSYRG  L  +L QV
Sbjct: 28  SLLVVETADRPGLLVDLVKIIDDINITVQSGEFDTEGLLAKAKFHVSYRGKPLIKALQQV 87

Query: 261 LVNCLRYYLRRPETDEDSY 279
           L N LRY+LRRP T+E SY
Sbjct: 88  LANSLRYFLRRPTTEEGSY 106



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.316    0.134    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,517,214
Number of extensions: 270518
Number of successful extensions: 725
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 724
Number of HSP's successfully gapped: 2
Length of query: 279
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 179
Effective length of database: 11,814,401
Effective search space: 2114777779
Effective search space used: 2114777779
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 155 (64.3 bits)