Os08g0242700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os08g0242700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 23.09 | 0.226 | 15.4 | -0.964 | 0.604 | -0.466 | -0.308 | 0.436 | -0.502 | 21.1 | 24.6 | 1032 | -- | -- |
| 23.32 | 0.225 | 15.4 | -0.887 | 0.6 | -0.498 | -0.413 | -- | -0.493 | 21.1 | 24.1 | 1078 | -- | -- |
| 23.39 | 0.225 | 15.4 | -0.974 | 0.599 | -0.444 | -- | 0.546 | -0.502 | 21.1 | 24.4 | 971 | -- | -- |
| 23.78 | 0.227 | 15.4 | -0.87 | 0.599 | -0.512 | -- | -- | -0.488 | 21.1 | 23.9 | 1031 | -- | -- |
| 37.71 | 0.286 | 15.4 | -1.15 | -- | -0.849 | -- | 0.944 | -0.578 | -- | 30.1 | 735 | -- | -- |
| 27.02 | 0.244 | 15.4 | -0.743 | 0.64 | -- | -0.379 | -- | -0.383 | 21.3 | -- | -- | -- | -- |
| 27.54 | 0.246 | 15.4 | -0.729 | 0.642 | -- | -- | -- | -0.382 | 21.3 | -- | -- | -- | -- |
| 38.3 | 0.288 | 15.4 | -0.986 | -- | -0.899 | -- | -- | -0.547 | -- | 29.7 | 744 | -- | -- |
| 41.51 | 0.3 | 15.4 | -- | 0.634 | -0.0555 | -- | -- | -0.309 | 21.2 | 41.85 | 1004 | -- | -- |
| 51.57 | 0.336 | 15.4 | -0.726 | -- | -- | -- | -- | -0.385 | -- | -- | -- | -- | -- |
| 41.57 | 0.302 | 15.4 | -- | 0.642 | -- | -- | -- | -0.301 | 21.2 | -- | -- | -- | -- |
| 60.57 | 0.362 | 15.4 | -- | -- | -0.534 | -- | -- | -0.37 | -- | 122.5 | 704 | -- | -- |
| 65.48 | 0.378 | 15.4 | -- | -- | -- | -- | -- | -0.304 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 22.00 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 5 | 11 |
| 2 | 22.00 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 4 | 13 |
| 11 | 22.18 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 7 | 2 |
| 14 | 22.22 | temperature | 25.0 | 720 | < th | dose dependent | sin | 2 | NA |
| 34 | 22.43 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 5 | 19 |
| 79 | 22.68 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 1 | 16 |
| 90 | 22.72 | temperature | 15.0 | 720 | > th | dose dependent | sin | 4 | NA |
| 98 | 22.73 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 22 | 19 |
| 128 | 22.80 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 5 | 8 |
| 250 | 23.02 | humidity | 50.0 | 14400 | < th | dose independent | rect. | 11 | 2 |
| 314 | 23.09 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 8 | 10 |
| 320 | 23.10 | temperature | 20.0 | 720 | > th | dose independent | rect. | 3 | 15 |
| 333 | 23.11 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 8 | 10 |
| 338 | 23.11 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 8 | 11 |
| 348 | 23.12 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 8 | 1 |
| 349 | 23.12 | temperature | 20.0 | 720 | > th | dose independent | rect. | 5 | 12 |
| 379 | 23.15 | temperature | 20.0 | 720 | < th | dose independent | rect. | 4 | 12 |
| 382 | 23.15 | humidity | 50.0 | 14400 | < th | dose dependent | rect. | 9 | 4 |
| 409 | 23.16 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 13 | 2 |
| 424 | 23.17 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 8 | 21 |
| 434 | 23.18 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 8 | 21 |
| 499 | 23.20 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 21 | 13 |
| 514 | 23.21 | radiation | 1.0 | 1440 | < th | dose dependent | sin | 19 | NA |
| 518 | 23.21 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 14 | 5 |
| 535 | 23.21 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 7 | 21 |
| 541 | 23.22 | humidity | 50.0 | 14400 | < th | dose dependent | sin | 7 | NA |
| 601 | 23.24 | temperature | 20.0 | 720 | > th | dose independent | rect. | 5 | 4 |
| 625 | 23.24 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 7 | 17 |
| 652 | 23.26 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 14 | 4 |
| 653 | 23.26 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 12 | 7 |
| 654 | 23.26 | temperature | 20.0 | 720 | > th | dose independent | rect. | 5 | 8 |
| 655 | 23.26 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 8 | 8 |
| 661 | 23.26 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 11 | 13 |
| 682 | 23.27 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 12 | 7 |
| 683 | 23.27 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 8 | 8 |
| 726 | 23.29 | radiation | 1.0 | 1440 | < th | dose independent | sin | 20 | NA |
| 837 | 23.32 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 14 | 4 |
| 877 | 23.33 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 8 | 1 |
| 914 | 23.34 | radiation | 1.0 | 1440 | > th | dose independent | sin | 20 | NA |
| 915 | 23.34 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 11 | 2 |
| 916 | 23.34 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 10 | 6 |
| 919 | 23.34 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 14 | 7 |
| 922 | 23.34 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 12 | 10 |
| 950 | 23.35 | temperature | 20.0 | 720 | > th | dose independent | sin | 2 | NA |
| 952 | 23.35 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 16 | 4 |
| 953 | 23.35 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 4 |
| 956 | 23.35 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 5 |
| 968 | 23.35 | humidity | 80.0 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 971 | 23.35 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 5 |
| 994 | 23.36 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 19 | 1 |