BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0242700 Os08g0242700|AK068554
         (106 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G16880.1  | chr1:5773796-5776125 FORWARD LENGTH=291            131   9e-32
AT5G04740.1  | chr5:1368713-1371391 REVERSE LENGTH=302            111   8e-26

>AT1G16880.1 | chr1:5773796-5776125 FORWARD LENGTH=291
          Length = 290

 Score =  131 bits (329), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 62/79 (78%), Positives = 71/79 (89%)

Query: 28  SLLVVETADRPGLLVDLVKIIDDINITVQSGEFDTEGLLAKAKFHVSYRGKPLIKALQQV 87
           SLL +E+ADRPGLLV+LVKII DI++ V+SGEFDTEGLLAK KFHVSYR K LIK LQQV
Sbjct: 212 SLLFIESADRPGLLVELVKIISDISVAVESGEFDTEGLLAKVKFHVSYRNKALIKPLQQV 271

Query: 88  LANSLRYFLRRPTTEEGSY 106
           LANSLRYFLRRP+T+E S+
Sbjct: 272 LANSLRYFLRRPSTDESSF 290



>AT5G04740.1 | chr5:1368713-1371391 REVERSE LENGTH=302
          Length = 301

 Score =  111 bits (277), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 51/79 (64%), Positives = 66/79 (83%)

Query: 28  SLLVVETADRPGLLVDLVKIIDDINITVQSGEFDTEGLLAKAKFHVSYRGKPLIKALQQV 87
           SLLV+ETADRPGL+V+++K++ D+NI V+S E DTEGL+AK KFHVSY+G+ L ++L QV
Sbjct: 223 SLLVIETADRPGLVVEMIKVMADVNIDVESAEIDTEGLVAKDKFHVSYQGQALNRSLSQV 282

Query: 88  LANSLRYFLRRPTTEEGSY 106
           L N LRYFLRRP T+  SY
Sbjct: 283 LVNCLRYFLRRPETDIDSY 301



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.327    0.143    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,120,008
Number of extensions: 73017
Number of successful extensions: 257
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 257
Number of HSP's successfully gapped: 2
Length of query: 106
Length of database: 11,106,569
Length adjustment: 75
Effective length of query: 31
Effective length of database: 9,050,369
Effective search space: 280561439
Effective search space used: 280561439
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 105 (45.1 bits)