BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0242700 Os08g0242700|AK068554
         (106 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os08g0242700  Hypothetical protein                                219   5e-58
Os12g0152700  Amino acid-binding ACT domain containing protein    112   9e-26

>Os08g0242700 Hypothetical protein
          Length = 106

 Score =  219 bits (557), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 106/106 (100%), Positives = 106/106 (100%)

Query: 1   MVNGMLDYCICDASKISFICFIYLFHFSLLVVETADRPGLLVDLVKIIDDINITVQSGEF 60
           MVNGMLDYCICDASKISFICFIYLFHFSLLVVETADRPGLLVDLVKIIDDINITVQSGEF
Sbjct: 1   MVNGMLDYCICDASKISFICFIYLFHFSLLVVETADRPGLLVDLVKIIDDINITVQSGEF 60

Query: 61  DTEGLLAKAKFHVSYRGKPLIKALQQVLANSLRYFLRRPTTEEGSY 106
           DTEGLLAKAKFHVSYRGKPLIKALQQVLANSLRYFLRRPTTEEGSY
Sbjct: 61  DTEGLLAKAKFHVSYRGKPLIKALQQVLANSLRYFLRRPTTEEGSY 106



>Os12g0152700 Amino acid-binding ACT domain containing protein
          Length = 279

 Score =  112 bits (279), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 52/79 (65%), Positives = 64/79 (81%)

Query: 28  SLLVVETADRPGLLVDLVKIIDDINITVQSGEFDTEGLLAKAKFHVSYRGKPLIKALQQV 87
           S+L +ETADRPGLL+++VKII D+N+ V+S E DTEGL+AK KFHVSYRG  L  +L QV
Sbjct: 201 SMLYIETADRPGLLLEIVKIITDVNVDVESAEIDTEGLVAKDKFHVSYRGAKLNSSLSQV 260

Query: 88  LANSLRYFLRRPTTEEGSY 106
           L N LRY+LRRP T+E SY
Sbjct: 261 LVNCLRYYLRRPETDEDSY 279



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.327    0.143    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,129,005
Number of extensions: 101359
Number of successful extensions: 322
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 322
Number of HSP's successfully gapped: 2
Length of query: 106
Length of database: 17,035,801
Length adjustment: 74
Effective length of query: 32
Effective length of database: 13,171,965
Effective search space: 421502880
Effective search space used: 421502880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 149 (62.0 bits)