BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0147200 Os12g0147200|AK063680
         (147 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os12g0147200  Conserved hypothetical protein                      217   3e-57
Os11g0149200  Conserved hypothetical protein                      163   5e-41

>Os12g0147200 Conserved hypothetical protein
          Length = 147

 Score =  217 bits (552), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 110/147 (74%), Positives = 110/147 (74%)

Query: 1   MMYMRATHRDEEGKKVTEKVAVPETRHPDTARHFERKLDQQGLHRMERHPANGSRGIGAP 60
           MMYMRATHRDEEGKKVTEKVAVPETRHPDTARHFERKLDQQGLHRMERHPANGSRGIGAP
Sbjct: 1   MMYMRATHRDEEGKKVTEKVAVPETRHPDTARHFERKLDQQGLHRMERHPANGSRGIGAP 60

Query: 61  PPKSGRGGKFTWEGPDSIVDSQLDPLPAAIDRNDPNYXXXXXXXXXXXXXXXXXXXXXXX 120
           PPKSGRGGKFTWEGPDSIVDSQLDPLPAAIDRNDPNY                       
Sbjct: 61  PPKSGRGGKFTWEGPDSIVDSQLDPLPAAIDRNDPNYEEEEGDHEREADVVGEVEVAKVA 120

Query: 121 XXXXXXXXXXXXXXPPQLHEKLQLQPQ 147
                         PPQLHEKLQLQPQ
Sbjct: 121 GDARDGVARVDVVAPPQLHEKLQLQPQ 147



>Os11g0149200 Conserved hypothetical protein
          Length = 146

 Score =  163 bits (412), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 78/99 (78%), Positives = 84/99 (84%), Gaps = 2/99 (2%)

Query: 1  MMYMRATHRDEEGKKVTEKVAVPETRHPDTARHFERKLDQQGLHRMERHPANG--SRGIG 58
          M YMR THRDEEGKKVTEKV +PETR PDTARHFERKL++QG HR+ERHPANG    GIG
Sbjct: 1  MAYMRVTHRDEEGKKVTEKVPIPETRRPDTARHFERKLEEQGFHRLERHPANGPARAGIG 60

Query: 59 APPPKSGRGGKFTWEGPDSIVDSQLDPLPAAIDRNDPNY 97
          APPPKSGRGGKFTWEGPD  VD+QL P P A+D NDPNY
Sbjct: 61 APPPKSGRGGKFTWEGPDGPVDAQLQPAPPAVDPNDPNY 99



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.314    0.134    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,079,741
Number of extensions: 221129
Number of successful extensions: 578
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 577
Number of HSP's successfully gapped: 2
Length of query: 147
Length of database: 17,035,801
Length adjustment: 91
Effective length of query: 56
Effective length of database: 12,284,327
Effective search space: 687922312
Effective search space used: 687922312
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 151 (62.8 bits)