BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0142600 Os12g0142600|AK067092
(259 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0142600 DTW domain containing protein 424 e-119
Os11g0145100 DTW domain containing protein 394 e-110
>Os12g0142600 DTW domain containing protein
Length = 259
Score = 424 bits (1090), Expect = e-119, Method: Compositional matrix adjust.
Identities = 218/259 (84%), Positives = 218/259 (84%)
Query: 1 MDFEPLPSAAGDATADETPPGRAVCSSGCGRPTTVCLCPYLPATPLPTSTTVVILHHPHA 60
MDFEPLPSAAGDATADETPPGRAVCSSGCGRPTTVCLCPYLPATPLPTSTTVVILHHPHA
Sbjct: 1 MDFEPLPSAAGDATADETPPGRAVCSSGCGRPTTVCLCPYLPATPLPTSTTVVILHHPHA 60
Query: 61 LRRNPLSTLPLLARSLSNLRLIPGRRLLPSSAPVISRSPVLLLFPSPDAADLASWCRSTP 120
LRRNPLSTLPLLARSLSNLRLIPGRRLLPSSAPVISRSPVLLLFPSPDAADLASWCRSTP
Sbjct: 61 LRRNPLSTLPLLARSLSNLRLIPGRRLLPSSAPVISRSPVLLLFPSPDAADLASWCRSTP 120
Query: 121 PPARANPTLLLLDGTWKQAKEMHAASLPFLSSFAVPVSLPVDCGVDGDSMFEGELVVKKE 180
PPARANPTLLLLDGTWKQAKEMHAASLPFLSSFAVPVSLPVDCGVDGDSMFEGELVVKKE
Sbjct: 121 PPARANPTLLLLDGTWKQAKEMHAASLPFLSSFAVPVSLPVDCGVDGDSMFEGELVVKKE 180
Query: 181 PHKGCVSTMEAVXXXXXXXXXXXXXXXXXXTMVGVLRAMVAFQAEHLQHXXXXXXXXXXX 240
PHKGCVSTMEAV TMVGVLRAMVAFQAEHLQH
Sbjct: 181 PHKGCVSTMEAVARALRLLEPEGRGEEIEETMVGVLRAMVAFQAEHLQHRPMKPRVKMRK 240
Query: 241 XXXXXXXXXXXXNTLDWSD 259
NTLDWSD
Sbjct: 241 KKDIKREEEMKRNTLDWSD 259
>Os11g0145100 DTW domain containing protein
Length = 256
Score = 394 bits (1013), Expect = e-110, Method: Compositional matrix adjust.
Identities = 201/229 (87%), Positives = 206/229 (89%), Gaps = 1/229 (0%)
Query: 1 MDFEPLPSAAGDATADETPPGRAVCSSGCGRPTTVCLCPYLPATPLPTSTTVVILHHPHA 60
MDFEPLPSAAGDATADETPPGRAVCSSGCGRP+TVCLCPYLPATPLPTSTTVV+LHHPHA
Sbjct: 1 MDFEPLPSAAGDATADETPPGRAVCSSGCGRPSTVCLCPYLPATPLPTSTTVVVLHHPHA 60
Query: 61 LRRNPLSTLPLLARSLSNLRLIPGRRLLPSSAPVISRSPVLLLFPSPDAADLASWCRSTP 120
LRRNPLSTLPLLARSLSNLRLIPGRRLLPSS P+I +PVLLLFPSP AADLASWCRSTP
Sbjct: 61 LRRNPLSTLPLLARSLSNLRLIPGRRLLPSSGPLIP-NPVLLLFPSPGAADLASWCRSTP 119
Query: 121 PPARANPTLLLLDGTWKQAKEMHAASLPFLSSFAVPVSLPVDCGVDGDSMFEGELVVKKE 180
P ARANPTLLLLDGTWKQAKEMHAASLPFLSSFAVPVSLPVDCGVDGDSMFEG+LVVKKE
Sbjct: 120 PAARANPTLLLLDGTWKQAKEMHAASLPFLSSFAVPVSLPVDCGVDGDSMFEGKLVVKKE 179
Query: 181 PHKGCVSTMEAVXXXXXXXXXXXXXXXXXXTMVGVLRAMVAFQAEHLQH 229
PHKGCVSTMEAV TMVGVLRAMVAFQAEHLQH
Sbjct: 180 PHKGCVSTMEAVARALRLLEPEGRGAEIEETMVGVLRAMVAFQAEHLQH 228
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.134 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,241,908
Number of extensions: 438817
Number of successful extensions: 1621
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1617
Number of HSP's successfully gapped: 2
Length of query: 259
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 160
Effective length of database: 11,866,615
Effective search space: 1898658400
Effective search space used: 1898658400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 155 (64.3 bits)