Os12g0142600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : DTW domain containing protein.
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Os12g0142600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : DTW domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 100.21 | 0.47 | 9.04 | -1.52 | 0.49 | 0.669 | -1.23 | -0.324 | -0.443 | 22.2 | 0.17 | 1509 | -- | -- |
| 100.27 | 0.466 | 9.04 | -1.52 | 0.484 | 0.768 | -1.27 | -- | -0.435 | 22.2 | 0.17 | 1512 | -- | -- |
| 104.78 | 0.477 | 9.02 | -1.44 | 0.487 | 0.36 | -- | -1.84 | -0.463 | 22.2 | 0.09011 | 1631 | -- | -- |
| 106.56 | 0.481 | 9.04 | -1.49 | 0.498 | 0.753 | -- | -- | -0.442 | 22.7 | 0.17 | 1498 | -- | -- |
| 108.14 | 0.487 | 9.04 | -1.62 | -- | 0.422 | -- | -0.993 | -0.488 | -- | 0.09011 | 1631 | -- | -- |
| 105.44 | 0.481 | 9.07 | -1.74 | 0.581 | -- | -1.28 | -- | -0.53 | 22.6 | -- | -- | -- | -- |
| 111.99 | 0.496 | 9.06 | -1.69 | 0.587 | -- | -- | -- | -0.528 | 23 | -- | -- | -- | -- |
| 114.2 | 0.5 | 9.04 | -1.66 | -- | 0.42 | -- | -- | -0.508 | -- | 0.17 | 1613 | -- | -- |
| 156.72 | 0.583 | 9.04 | -- | 0.659 | 1.49 | -- | -- | -0.289 | 22.8 | 0.009994 | 1436 | -- | -- |
| 133.4 | 0.54 | 9.05 | -1.68 | -- | -- | -- | -- | -0.524 | -- | -- | -- | -- | -- |
| 187.31 | 0.64 | 9.02 | -- | 0.573 | -- | -- | -- | -0.34 | 22.8 | -- | -- | -- | -- |
| 162.56 | 0.594 | 9.02 | -- | -- | 1.86 | -- | -- | -0.267 | -- | 0.000186 | 1538 | -- | -- |
| 207.64 | 0.673 | 9.01 | -- | -- | -- | -- | -- | -0.338 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 96.04 | wind | 7 | 10 | > th | dose dependent | rect. | 17 | 12 |
| 6 | 96.05 | wind | 7 | 10 | > th | dose dependent | rect. | 17 | 10 |
| 8 | 96.10 | wind | 7 | 10 | > th | dose dependent | rect. | 17 | 5 |
| 13 | 96.22 | wind | 7 | 10 | > th | dose dependent | rect. | 17 | 3 |
| 15 | 96.35 | wind | 7 | 10 | > th | dose dependent | rect. | 17 | 1 |
| 39 | 96.90 | wind | 7 | 10 | > th | dose independent | rect. | 17 | 4 |
| 42 | 96.94 | wind | 9 | 30 | > th | dose independent | rect. | 17 | 9 |
| 85 | 97.40 | atmosphere | 1010 | 90 | < th | dose dependent | rect. | 15 | 7 |
| 116 | 97.52 | atmosphere | 1010 | 10 | < th | dose dependent | rect. | 17 | 5 |
| 142 | 97.75 | temperature | 25 | 90 | < th | dose independent | rect. | 16 | 7 |
| 150 | 97.90 | radiation | 20 | 30 | < th | dose dependent | rect. | 20 | 21 |
| 151 | 97.91 | temperature | 15 | 30 | > th | dose independent | rect. | 20 | 21 |
| 155 | 98.01 | atmosphere | 1005 | 270 | < th | dose independent | rect. | 17 | 1 |
| 157 | 98.16 | temperature | 25 | 10 | < th | dose independent | rect. | 17 | 5 |
| 166 | 98.25 | atmosphere | 1005 | 270 | < th | dose independent | rect. | 15 | 5 |
| 167 | 98.26 | radiation | 1 | 720 | < th | dose dependent | rect. | 17 | 1 |
| 169 | 98.29 | radiation | 1 | 720 | < th | dose dependent | rect. | 12 | 6 |
| 177 | 98.36 | radiation | 1 | 90 | < th | dose dependent | rect. | 16 | 3 |
| 181 | 98.38 | temperature | 15 | 270 | > th | dose independent | rect. | 19 | 10 |
| 182 | 98.38 | temperature | 15 | 30 | > th | dose independent | rect. | 22 | 19 |
| 186 | 98.41 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 23 | 1 |
| 188 | 98.43 | temperature | 20 | 720 | < th | dose dependent | rect. | 16 | 3 |
| 193 | 98.47 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 12 | 11 |
| 195 | 98.51 | atmosphere | 1005 | 10 | < th | dose independent | rect. | 16 | 6 |
| 201 | 98.55 | temperature | 15 | 30 | > th | dose independent | rect. | 20 | 10 |
| 202 | 98.56 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 22 | 5 |
| 206 | 98.57 | temperature | 20 | 720 | < th | dose dependent | rect. | 14 | 6 |
| 232 | 98.66 | temperature | 25 | 270 | < th | dose independent | rect. | 17 | 1 |
| 237 | 98.68 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 1 | 2 |
| 240 | 98.69 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 1 | 2 |
| 256 | 98.72 | radiation | 20 | 30 | < th | dose dependent | rect. | 20 | 18 |
| 267 | 98.75 | radiation | 1 | 720 | < th | dose dependent | rect. | 6 | 12 |
| 274 | 98.79 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 23 | 4 |
| 276 | 98.79 | radiation | 1 | 720 | < th | dose independent | rect. | 12 | 6 |
| 309 | 98.87 | wind | 9 | 10 | > th | dose independent | sin | 12 | NA |
| 310 | 98.87 | wind | 9 | 10 | < th | dose independent | sin | 13 | NA |
| 311 | 98.87 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 23 | 1 |
| 314 | 98.87 | wind | 7 | 10 | > th | dose dependent | sin | 11 | NA |
| 340 | 98.90 | radiation | 1 | 720 | < th | dose dependent | rect. | 21 | 21 |
| 355 | 98.94 | temperature | 25 | 90 | < th | dose independent | rect. | 16 | 3 |
| 361 | 98.95 | temperature | 30 | 90 | < th | dose dependent | rect. | 16 | 7 |
| 373 | 98.98 | radiation | 1 | 720 | < th | dose independent | rect. | 16 | 2 |
| 399 | 99.06 | atmosphere | 1005 | 14400 | < th | dose independent | sin | 13 | NA |
| 473 | 99.16 | radiation | 1 | 90 | < th | dose independent | rect. | 16 | 3 |
| 508 | 99.21 | atmosphere | 1005 | 14400 | > th | dose independent | sin | 12 | NA |
| 512 | 99.21 | atmosphere | 1005 | 270 | < th | dose dependent | rect. | 17 | 2 |
| 553 | 99.26 | atmosphere | 1005 | 270 | > th | dose dependent | rect. | 24 | 8 |
| 567 | 99.28 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 11 | 18 |
| 568 | 99.28 | temperature | 15 | 270 | > th | dose independent | rect. | 19 | 20 |
| 655 | 99.36 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 21 | 20 |
| 679 | 99.38 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 21 | 17 |
| 682 | 99.38 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 21 | 18 |
| 686 | 99.38 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 16 | 22 |
| 687 | 99.38 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 16 | 22 |
| 697 | 99.39 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 21 | 20 |
| 735 | 99.41 | radiation | 1 | 720 | > th | dose independent | rect. | 9 | 6 |
| 758 | 99.42 | atmosphere | 1005 | 14400 | < th | dose independent | no | NA | NA |
| 851 | 99.45 | temperature | 15 | 10 | > th | dose independent | rect. | 18 | 23 |
| 854 | 99.45 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 1 | 23 |
| 857 | 99.46 | atmosphere | 1005 | 14400 | > th | dose independent | no | NA | NA |
| 859 | 99.46 | temperature | 15 | 720 | > th | dose independent | rect. | 18 | 6 |
| 886 | 99.47 | radiation | 1 | 720 | > th | dose independent | rect. | 9 | 8 |
| 919 | 99.48 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 1 | 23 |
| 945 | 99.50 | radiation | 20 | 30 | < th | dose dependent | rect. | 20 | 16 |
| 975 | 99.53 | temperature | 15 | 90 | > th | dose independent | rect. | 22 | 8 |