BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0135200 Os12g0135200|J090001E19
(415 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0135200 Cyclin-like F-box domain containing protein 560 e-160
Os11g0138700 Cyclin-like F-box domain containing protein 550 e-156
Os03g0415400 324 7e-89
>Os12g0135200 Cyclin-like F-box domain containing protein
Length = 415
Score = 560 bits (1444), Expect = e-160, Method: Compositional matrix adjust.
Identities = 307/415 (73%), Positives = 307/415 (73%)
Query: 1 MPAAESCHSRSLSWLVKSCIPADPARHIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXE 60
MPAAESCHSRSLSWLVKSCIPADPARHI E
Sbjct: 1 MPAAESCHSRSLSWLVKSCIPADPARHIAVPVLCPTPQPPPPSSPPAPPISALPDDLLLE 60
Query: 61 CLARVPRASIPPLPAVSRRFATLLASDAFLHLRRAHAHLRPSLLGLSVSDNGCIAQALLR 120
CLARVPRASIPPLPAVSRRFATLLASDAFLHLRRAHAHLRPSLLGLSVSDNGCIAQALLR
Sbjct: 61 CLARVPRASIPPLPAVSRRFATLLASDAFLHLRRAHAHLRPSLLGLSVSDNGCIAQALLR 120
Query: 121 FESSXXXXXXXXXXXXXXXXHCGGSVFAHARAVVLGRDVFLIGRGATLRVDALTGAARAC 180
FESS HCGGSVFAHARAVVLGRDVFLIGRGATLRVDALTGAARAC
Sbjct: 121 FESSVPVLEVAALPLPPTLLHCGGSVFAHARAVVLGRDVFLIGRGATLRVDALTGAARAC 180
Query: 181 APTLFPRKKFAAAAVGDRIYVAGGSARTAVVEEYDPEADAWRVVGEAPRRRYGCXXXXXX 240
APTLFPRKKFAAAAVGDRIYVAGGSARTAVVEEYDPEADAWRVVGEAPRRRYGC
Sbjct: 181 APTLFPRKKFAAAAVGDRIYVAGGSARTAVVEEYDPEADAWRVVGEAPRRRYGCAGASAG 240
Query: 241 XXXXXXXXXXXXXXXXXXLEAHVCAGSVDALHVASGAWARPRALPXXXXXXXXXXXXDHL 300
LEAHVCAGSVDALHVASGAWARPRALP DHL
Sbjct: 241 GVFYVAGGVAVSGEGARALEAHVCAGSVDALHVASGAWARPRALPGGGCVVGACGVGDHL 300
Query: 301 YMVASHAVELSFWRWCXXXXXXXXXXXXXXXVALEAPPMPRGSVGLGMAVRVAMAGLGTN 360
YMVASHAVELSFWRWC VALEAPPMPRGSVGLGMAVRVAMAGLGTN
Sbjct: 301 YMVASHAVELSFWRWCGATGRAGDGRGWGGWVALEAPPMPRGSVGLGMAVRVAMAGLGTN 360
Query: 361 RXXXXXXXXXXRGHNAGGGALEGMVLVYDIAGGKWSRAPDLPPGFRRAACAGVEC 415
R RGHNAGGGALEGMVLVYDIAGGKWSRAPDLPPGFRRAACAGVEC
Sbjct: 361 RVAAVVSAAAVRGHNAGGGALEGMVLVYDIAGGKWSRAPDLPPGFRRAACAGVEC 415
>Os11g0138700 Cyclin-like F-box domain containing protein
Length = 415
Score = 550 bits (1416), Expect = e-156, Method: Compositional matrix adjust.
Identities = 298/415 (71%), Positives = 301/415 (72%)
Query: 1 MPAAESCHSRSLSWLVKSCIPADPARHIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXE 60
MPAAESCHSRSLSWLVKSCIPADPARHI E
Sbjct: 1 MPAAESCHSRSLSWLVKSCIPADPARHIAVPVLCPTPQPPPPSSPPAPPISTLPDDLLLE 60
Query: 61 CLARVPRASIPPLPAVSRRFATLLASDAFLHLRRAHAHLRPSLLGLSVSDNGCIAQALLR 120
CLARVPRAS+PPLPAVSRRFATLLASDAFLHLRRAHAHLRPSLL LSVSDNGC+ QALLR
Sbjct: 61 CLARVPRASLPPLPAVSRRFATLLASDAFLHLRRAHAHLRPSLLALSVSDNGCVPQALLR 120
Query: 121 FESSXXXXXXXXXXXXXXXXHCGGSVFAHARAVVLGRDVFLIGRGATLRVDALTGAARAC 180
FESS HCGGSVFAHARAVVLGRDVFLIGRGATLRVDALTGAARAC
Sbjct: 121 FESSVPVLEVAPLPLPPTLLHCGGSVFAHARAVVLGRDVFLIGRGATLRVDALTGAARAC 180
Query: 181 APTLFPRKKFAAAAVGDRIYVAGGSARTAVVEEYDPEADAWRVVGEAPRRRYGCXXXXXX 240
APTLFPRKKFAAAAVGDRIYVAGGSARTA VEEYDPE DAWRVVGEAPRRRYGC
Sbjct: 181 APTLFPRKKFAAAAVGDRIYVAGGSARTAAVEEYDPEVDAWRVVGEAPRRRYGCAGASAG 240
Query: 241 XXXXXXXXXXXXXXXXXXLEAHVCAGSVDALHVASGAWARPRALPXXXXXXXXXXXXDHL 300
LEAHVCAGSVDALHVASG WARPRALP DHL
Sbjct: 241 GVFYVAGGVAVSGEGARALEAHVCAGSVDALHVASGTWARPRALPGGGCVVGACGVGDHL 300
Query: 301 YMVASHAVELSFWRWCXXXXXXXXXXXXXXXVALEAPPMPRGSVGLGMAVRVAMAGLGTN 360
Y+VASHAVELSFWRW VALEAPPMPRGSVGLGMAVRVAMAGLGTN
Sbjct: 301 YVVASHAVELSFWRWSGATGRGGDGRGWGGWVALEAPPMPRGSVGLGMAVRVAMAGLGTN 360
Query: 361 RXXXXXXXXXXRGHNAGGGALEGMVLVYDIAGGKWSRAPDLPPGFRRAACAGVEC 415
R RGHNAGGGALEGMVLVYDIAGGKWSRAPDLPPGFRRAACAGVEC
Sbjct: 361 RVAAVVSAAAVRGHNAGGGALEGMVLVYDIAGGKWSRAPDLPPGFRRAACAGVEC 415
>Os03g0415400
Length = 231
Score = 324 bits (831), Expect = 7e-89, Method: Compositional matrix adjust.
Identities = 174/231 (75%), Positives = 178/231 (77%)
Query: 1 MPAAESCHSRSLSWLVKSCIPADPARHIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXE 60
MPAAESCHSRSLSWLVKSCIPADPARHI E
Sbjct: 1 MPAAESCHSRSLSWLVKSCIPADPARHIAVPVLCPTPQPPPPSSPPAPPISALPDDLLLE 60
Query: 61 CLARVPRASIPPLPAVSRRFATLLASDAFLHLRRAHAHLRPSLLGLSVSDNGCIAQALLR 120
CLARVPRAS+PPLPAVSRRFATLLASDAFLHLRRAHAHLRPSLL LSVSDNGC AQALLR
Sbjct: 61 CLARVPRASLPPLPAVSRRFATLLASDAFLHLRRAHAHLRPSLLALSVSDNGCTAQALLR 120
Query: 121 FESSXXXXXXXXXXXXXXXXHCGGSVFAHARAVVLGRDVFLIGRGATLRVDALTGAARAC 180
F++S HC GSVFAHARAVVLGRDVFLIGRGATLRVDALTGAARAC
Sbjct: 121 FDASVPVLEVAALPLPPTLLHCCGSVFAHARAVVLGRDVFLIGRGATLRVDALTGAARAC 180
Query: 181 APTLFPRKKFAAAAVGDRIYVAGGSARTAVVEEYDPEADAWRVVGEAPRRR 231
APTLFPRKKFAAAAVGDRIYVAGGSART+ VEEYDPE DAW VVGEAPRRR
Sbjct: 181 APTLFPRKKFAAAAVGDRIYVAGGSARTSAVEEYDPEVDAWLVVGEAPRRR 231
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.324 0.136 0.439
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,237,993
Number of extensions: 421100
Number of successful extensions: 1519
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1506
Number of HSP's successfully gapped: 3
Length of query: 415
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 312
Effective length of database: 11,657,759
Effective search space: 3637220808
Effective search space used: 3637220808
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 157 (65.1 bits)