BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0134200 Os12g0134200|AK105296
         (912 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os12g0134200  Armadillo-like helical domain containing protein   1803   0.0  
Os11g0137300  Armadillo-like helical domain containing protein    441   e-123

>Os12g0134200 Armadillo-like helical domain containing protein
          Length = 912

 Score = 1803 bits (4670), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 882/912 (96%), Positives = 882/912 (96%)

Query: 1   DTLIYSSRKEERCAGTVWLVSLTMYCGQHPKILELLPQIQEALTHLLGDQNDLTQDLASQ 60
           DTLIYSSRKEERCAGTVWLVSLTMYCGQHPKILELLPQIQEALTHLLGDQNDLTQDLASQ
Sbjct: 1   DTLIYSSRKEERCAGTVWLVSLTMYCGQHPKILELLPQIQEALTHLLGDQNDLTQDLASQ 60

Query: 61  GMSIVYELGDASMKEQLVHALVNTLSGAAKKKRAIKLMEDSEVFQEGTIGNNPTGGKLST 120
           GMSIVYELGDASMKEQLVHALVNTLSGAAKKKRAIKLMEDSEVFQEGTIGNNPTGGKLST
Sbjct: 61  GMSIVYELGDASMKEQLVHALVNTLSGAAKKKRAIKLMEDSEVFQEGTIGNNPTGGKLST 120

Query: 121 YKELCSLANEMGQPDLIYKFMDLANYQAAINSKRGAAFGFSKIAKQAGEALQPHLHTLIP 180
           YKELCSLANEMGQPDLIYKFMDLANYQAAINSKRGAAFGFSKIAKQAGEALQPHLHTLIP
Sbjct: 121 YKELCSLANEMGQPDLIYKFMDLANYQAAINSKRGAAFGFSKIAKQAGEALQPHLHTLIP 180

Query: 181 RLVRYQYDPDKNIQDSMAHIWKLIVADPKKTIDEHYDLIVEDLLVQSGSRLWRSREASCL 240
           RLVRYQYDPDKNIQDSMAHIWKLIVADPKKTIDEHYDLIVEDLLVQSGSRLWRSREASCL
Sbjct: 181 RLVRYQYDPDKNIQDSMAHIWKLIVADPKKTIDEHYDLIVEDLLVQSGSRLWRSREASCL 240

Query: 241 ALADIIQGRRYGQVSKHLRKIWITTFRAMDDIKETVRNAGDSLCRAVSLLTVRLCDVSLT 300
           ALADIIQGRRYGQVSKHLRKIWITTFRAMDDIKETVRNAGDSLCRAVSLLTVRLCDVSLT
Sbjct: 241 ALADIIQGRRYGQVSKHLRKIWITTFRAMDDIKETVRNAGDSLCRAVSLLTVRLCDVSLT 300

Query: 301 TSSDANETMNIVLPYLLSEGILSKVSSVQKASISLVMKLAKGAGPALKPHLSELVSCMLE 360
           TSSDANETMNIVLPYLLSEGILSKVSSVQKASISLVMKLAKGAGPALKPHLSELVSCMLE
Sbjct: 301 TSSDANETMNIVLPYLLSEGILSKVSSVQKASISLVMKLAKGAGPALKPHLSELVSCMLE 360

Query: 361 CLSSLEDQRLNYVEMHAGNAGIQTEKLESLRIAVAKDSPMWETLDICLKVFDKESLDLLV 420
           CLSSLEDQRLNYVEMHAGNAGIQTEKLESLRIAVAKDSPMWETLDICLKVFDKESLDLLV
Sbjct: 361 CLSSLEDQRLNYVEMHAGNAGIQTEKLESLRIAVAKDSPMWETLDICLKVFDKESLDLLV 420

Query: 421 PRLAQMVKSAVGLNTRVGVASFITLLVQKVMVEIKPYAATLLRLLYSAVLEEKXXXXXXX 480
           PRLAQMVKSAVGLNTRVGVASFITLLVQKVMVEIKPYAATLLRLLYSAVLEEK       
Sbjct: 421 PRLAQMVKSAVGLNTRVGVASFITLLVQKVMVEIKPYAATLLRLLYSAVLEEKSSAAKRA 480

Query: 481 XXXXXXXVLKYASPSQAQKLIEDTTSLHLGEKNAQLSAAILIKSYLSNAADILSGYNAVV 540
                  VLKYASPSQAQKLIEDTTSLHLGEKNAQLSAAILIKSYLSNAADILSGYNAVV
Sbjct: 481 FASSCAAVLKYASPSQAQKLIEDTTSLHLGEKNAQLSAAILIKSYLSNAADILSGYNAVV 540

Query: 541 LPVIFASRFDDDKDIGALYGELWEDIPSSERVTLQLYLPEIISLLCDXXXXXXWAGKRKS 600
           LPVIFASRFDDDKDIGALYGELWEDIPSSERVTLQLYLPEIISLLCD      WAGKRKS
Sbjct: 541 LPVIFASRFDDDKDIGALYGELWEDIPSSERVTLQLYLPEIISLLCDSMSSSSWAGKRKS 600

Query: 601 AKAIKKLCDALGESLSVHHNNILESLLKELPGRFWEGKDAILDALAALCSSCHTAMSAED 660
           AKAIKKLCDALGESLSVHHNNILESLLKELPGRFWEGKDAILDALAALCSSCHTAMSAED
Sbjct: 601 AKAIKKLCDALGESLSVHHNNILESLLKELPGRFWEGKDAILDALAALCSSCHTAMSAED 660

Query: 661 SGMPSVILNAVCAACSRKSKLYREAAFSCLQQVITAFKDPGFFNIVFPMLYEVSNRSVIC 720
           SGMPSVILNAVCAACSRKSKLYREAAFSCLQQVITAFKDPGFFNIVFPMLYEVSNRSVIC
Sbjct: 661 SGMPSVILNAVCAACSRKSKLYREAAFSCLQQVITAFKDPGFFNIVFPMLYEVSNRSVIC 720

Query: 721 KTRNXXXXXXXXXXEQDETEGVSVSLDKVLNCVASSITVAFLQDIINQRKNILEIILNSL 780
           KTRN          EQDETEGVSVSLDKVLNCVASSITVAFLQDIINQRKNILEIILNSL
Sbjct: 721 KTRNSSSLTASSSAEQDETEGVSVSLDKVLNCVASSITVAFLQDIINQRKNILEIILNSL 780

Query: 781 SPEESWQIKLSSFLCIKELCYKFQNSDGNNTWPEETTYLVEELFHSTAPKVVDVIRLVKI 840
           SPEESWQIKLSSFLCIKELCYKFQNSDGNNTWPEETTYLVEELFHSTAPKVVDVIRLVKI
Sbjct: 781 SPEESWQIKLSSFLCIKELCYKFQNSDGNNTWPEETTYLVEELFHSTAPKVVDVIRLVKI 840

Query: 841 AQVHTAASECLLELSKLYRDFPLVDRKGPKFSGELAELCESEKSEQAKAFLKQCMDILKD 900
           AQVHTAASECLLELSKLYRDFPLVDRKGPKFSGELAELCESEKSEQAKAFLKQCMDILKD
Sbjct: 841 AQVHTAASECLLELSKLYRDFPLVDRKGPKFSGELAELCESEKSEQAKAFLKQCMDILKD 900

Query: 901 FEDPTGLAMEMD 912
           FEDPTGLAMEMD
Sbjct: 901 FEDPTGLAMEMD 912



>Os11g0137300 Armadillo-like helical domain containing protein
          Length = 1110

 Score =  441 bits (1134), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 207/207 (100%), Positives = 207/207 (100%)

Query: 1    DTLIYSSRKEERCAGTVWLVSLTMYCGQHPKILELLPQIQEALTHLLGDQNDLTQDLASQ 60
            DTLIYSSRKEERCAGTVWLVSLTMYCGQHPKILELLPQIQEALTHLLGDQNDLTQDLASQ
Sbjct: 904  DTLIYSSRKEERCAGTVWLVSLTMYCGQHPKILELLPQIQEALTHLLGDQNDLTQDLASQ 963

Query: 61   GMSIVYELGDASMKEQLVHALVNTLSGAAKKKRAIKLMEDSEVFQEGTIGNNPTGGKLST 120
            GMSIVYELGDASMKEQLVHALVNTLSGAAKKKRAIKLMEDSEVFQEGTIGNNPTGGKLST
Sbjct: 964  GMSIVYELGDASMKEQLVHALVNTLSGAAKKKRAIKLMEDSEVFQEGTIGNNPTGGKLST 1023

Query: 121  YKELCSLANEMGQPDLIYKFMDLANYQAAINSKRGAAFGFSKIAKQAGEALQPHLHTLIP 180
            YKELCSLANEMGQPDLIYKFMDLANYQAAINSKRGAAFGFSKIAKQAGEALQPHLHTLIP
Sbjct: 1024 YKELCSLANEMGQPDLIYKFMDLANYQAAINSKRGAAFGFSKIAKQAGEALQPHLHTLIP 1083

Query: 181  RLVRYQYDPDKNIQDSMAHIWKLIVAD 207
            RLVRYQYDPDKNIQDSMAHIWKLIVAD
Sbjct: 1084 RLVRYQYDPDKNIQDSMAHIWKLIVAD 1110



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.133    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 26,984,384
Number of extensions: 1024974
Number of successful extensions: 2603
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 2596
Number of HSP's successfully gapped: 2
Length of query: 912
Length of database: 17,035,801
Length adjustment: 110
Effective length of query: 802
Effective length of database: 11,292,261
Effective search space: 9056393322
Effective search space used: 9056393322
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 161 (66.6 bits)