Os12g0134200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Armadillo-like helical domain containing protein.
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Os12g0134200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Armadillo-like helical domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 22.55 | 0.223 | 11.1 | 0.381 | 0.332 | -0.879 | 0.448 | -1.62 | 0.303 | 5.05 | 25.54 | 237 | -- | -- |
| 25.47 | 0.235 | 11.1 | 0.0937 | 0.387 | -0.786 | 0.0043 | -- | 0.229 | 4.64 | 26.94 | 200 | -- | -- |
| 22.97 | 0.223 | 11.1 | 0.343 | 0.331 | -0.865 | -- | -1.41 | 0.297 | 4.81 | 25.47 | 229 | -- | -- |
| 25.45 | 0.235 | 11.1 | 0.108 | 0.373 | -0.779 | -- | -- | 0.236 | 4.7 | 26.9 | 198 | -- | -- |
| 25.8 | 0.237 | 11.1 | 0.409 | -- | -0.875 | -- | -1.74 | 0.328 | -- | 25 | 1475 | -- | -- |
| 34.07 | 0.274 | 11.1 | 0.311 | 0.19 | -- | 0.123 | -- | 0.407 | 6.03 | -- | -- | -- | -- |
| 34.1 | 0.273 | 11.1 | 0.312 | 0.192 | -- | -- | -- | 0.406 | 5.74 | -- | -- | -- | -- |
| 28.6 | 0.249 | 11.1 | 0.101 | -- | -0.713 | -- | -- | 0.25 | -- | 26.6 | 1260 | -- | -- |
| 25.75 | 0.236 | 11.1 | -- | 0.37 | -0.805 | -- | -- | 0.223 | 4.69 | 26.82 | 201 | -- | -- |
| 36 | 0.28 | 11.1 | 0.318 | -- | -- | -- | -- | 0.411 | -- | -- | -- | -- | -- |
| 36.66 | 0.283 | 11.1 | -- | 0.196 | -- | -- | -- | 0.371 | 5.67 | -- | -- | -- | -- |
| 28.84 | 0.25 | 11.1 | -- | -- | -0.761 | -- | -- | 0.229 | -- | 26.6 | 1264 | -- | -- |
| 38.66 | 0.29 | 11.1 | -- | -- | -- | -- | -- | 0.375 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 22.49 | temperature | 25 | 270 | < th | dose dependent | rect. | 24 | 23 |
| 2 | 22.51 | temperature | 25 | 270 | < th | dose dependent | rect. | 8 | 23 |
| 4 | 22.61 | temperature | 25 | 270 | < th | dose dependent | no | NA | NA |
| 5 | 22.63 | temperature | 25 | 720 | < th | dose dependent | rect. | 7 | 18 |
| 7 | 22.65 | temperature | 25 | 270 | < th | dose dependent | rect. | 6 | 23 |
| 14 | 22.72 | temperature | 25 | 270 | < th | dose dependent | rect. | 15 | 23 |
| 16 | 22.73 | temperature | 25 | 270 | < th | dose dependent | rect. | 11 | 23 |
| 21 | 22.74 | temperature | 25 | 270 | < th | dose dependent | rect. | 17 | 23 |
| 40 | 22.92 | temperature | 25 | 720 | < th | dose dependent | sin | 20 | NA |
| 120 | 23.60 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 5 |
| 319 | 24.15 | temperature | 20 | 270 | > th | dose dependent | sin | 10 | NA |
| 396 | 24.25 | temperature | 25 | 1440 | < th | dose dependent | rect. | 15 | 21 |
| 405 | 24.27 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 470 | 24.34 | temperature | 30 | 270 | < th | dose dependent | sin | 11 | NA |
| 471 | 24.34 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 7 |
| 482 | 24.34 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 23 |
| 534 | 24.41 | temperature | 20 | 1440 | > th | dose dependent | rect. | 22 | 3 |
| 710 | 24.62 | temperature | 20 | 1440 | > th | dose dependent | sin | 11 | NA |
| 723 | 24.64 | temperature | 10 | 1440 | > th | dose dependent | rect. | 20 | 6 |
| 726 | 24.64 | temperature | 20 | 270 | > th | dose dependent | rect. | 18 | 15 |
| 892 | 24.77 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 18 |