BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0134200 Os12g0134200|AK105296
         (912 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G26780.1  | chr2:11410125-11423598 FORWARD LENGTH=1827        1134   0.0  

>AT2G26780.1 | chr2:11410125-11423598 FORWARD LENGTH=1827
          Length = 1826

 Score = 1134 bits (2932), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 548/904 (60%), Positives = 697/904 (77%), Gaps = 3/904 (0%)

Query: 1    DTLIYSSRKEERCAGTVWLVSLTMYCGQHPKILELLPQIQEALTHLLGDQNDLTQDLASQ 60
            DTL+YSSRKEERCAGTVW++SLTMYCGQ P I  +LP+IQEA +HLLGDQN+LTQ+LASQ
Sbjct: 919  DTLLYSSRKEERCAGTVWMLSLTMYCGQQPSIQLMLPKIQEAFSHLLGDQNELTQELASQ 978

Query: 61   GMSIVYELGDASMKEQLVHALVNTLSGAAKKKRAIKLMEDSEVFQEGTIGNNPTGGKLST 120
            GMSI+YELGDASMK+ LV ALVNTL+G +K+KRAIKL+E+SEVFQEGTIG +P+GGK+ST
Sbjct: 979  GMSIIYELGDASMKKSLVDALVNTLTGTSKRKRAIKLVEESEVFQEGTIGESPSGGKIST 1038

Query: 121  YKELCSLANEMGQPDLIYKFMDLANYQAAINSKRGAAFGFSKIAKQAGEALQPHLHTLIP 180
            YKELC+LANEMGQPDLIYKFMDLAN+QA++NSKRGAAFGFSKIAKQAG+AL+PHL  LIP
Sbjct: 1039 YKELCNLANEMGQPDLIYKFMDLANHQASLNSKRGAAFGFSKIAKQAGDALRPHLRLLIP 1098

Query: 181  RLVRYQYDPDKNIQDSMAHIWKLIVADPKKTIDEHYDLIVEDLLVQSGSRLWRSREASCL 240
            RL+RYQYDPDKN+QD+MAHIWK ++ DPKK +DEH + I +DLLVQ GSRLWRSREASCL
Sbjct: 1099 RLIRYQYDPDKNVQDAMAHIWKALIQDPKKAVDEHLNHIFDDLLVQCGSRLWRSREASCL 1158

Query: 241  ALADIIQGRRYGQVSKHLRKIWITTFRAMDDIKETVRNAGDSLCRAVSLLTVRLCDVSLT 300
            ALADIIQGR++ QV +HL+K+WI  FRAMDDIKETVRNAGD LCRAV+ LT+R+CDV+LT
Sbjct: 1159 ALADIIQGRKFDQVKEHLKKLWIAAFRAMDDIKETVRNAGDKLCRAVTSLTIRICDVTLT 1218

Query: 301  TSSDANETMNIVLPYLLSEGILSKVSSVQKASISLVMKLAKGAGPALKPHLSELVSCMLE 360
              +DA + M+IVLP+LLSEGI+SKV+SV+KASI +VMKLAKGAG AL+PHLS+LV CMLE
Sbjct: 1219 ELADAKQAMDIVLPFLLSEGIMSKVNSVRKASIGVVMKLAKGAGVALRPHLSDLVCCMLE 1278

Query: 361  CLSSLEDQRLNYVEMHAGNAGIQTEKLESLRIAVAKDSPMWETLDICLKVFDKESLDLLV 420
             LSSLEDQ LNYVE+HA N GI+TEKLE+LRI+++K SPMWETLD+C+ + D ESL+ L+
Sbjct: 1279 SLSSLEDQGLNYVELHAANIGIETEKLENLRISISKGSPMWETLDLCINIVDIESLEQLI 1338

Query: 421  PRLAQMVKSAVGLNTRVGVASFITLLVQKVMVEIKPYAATLLRLLYSAVLEEKXXXXXXX 480
            PRL Q+V+  VGLNTRVGVASFI+LLVQKV  EIKP+   LLRLL+    EEK       
Sbjct: 1339 PRLTQLVRGGVGLNTRVGVASFISLLVQKVGSEIKPFTGMLLRLLFPVAKEEKSSAAKRA 1398

Query: 481  XXXXXXXVLKYASPSQAQKLIEDTTSLHLGEKNAQLSAAILIKSYLSNAADILSGYNAVV 540
                   VLKY+SPSQAQ LIE+T +LH G++++Q++ A L KS+ S AADI+S + + +
Sbjct: 1399 FSSACGIVLKYSSPSQAQSLIEETAALHSGDRSSQIACASLFKSFSSTAADIMSSHQSAI 1458

Query: 541  LPVIFASRFDDDKDIGALYGELWEDIPSSERVTLQLYLPEIISLLCDXXXXXXWAGKRKS 600
            +P IF SRF+D+K I +L+ E+WEDI S ERVTLQL+L EI++ +C+      WA K+KS
Sbjct: 1459 VPAIFISRFEDEKQISSLFEEVWEDITSGERVTLQLFLQEIVNHICESITSSSWASKKKS 1518

Query: 601  AKAIKKLCDALGESLSVHHNNILESLLKELPGRFWEGKDAILDALAALCSSCHTAMSAED 660
             KAI KL + LGESLS HH  +L+ L+ E+PGR WEGKDA+LDAL AL  +CH A++ ED
Sbjct: 1519 GKAICKLTEVLGESLSPHHKRLLQCLVNEIPGRLWEGKDALLDALGALSVACHEAITKED 1578

Query: 661  SGMPSVILNAVCAACSRKSKLYREAAFSCLQQVITAFKDPGFFNIVFPMLYEVSNRSVIC 720
               P+ IL+ +C+AC +K K YRE+AFSCL++VI AF DP FF+ VFPMLYE+ N + I 
Sbjct: 1579 PTTPTTILSLICSACKKKLKKYRESAFSCLEKVIIAFGDPKFFHAVFPMLYEMCNTASIK 1638

Query: 721  KTRNXXXXXXXXXXEQDETEGVSVSLDKVLNCVASSITVAFLQDIINQRKNILEIILNSL 780
                          E +  E   V L+K++ CV S I VA + DI++ + +++ +++ SL
Sbjct: 1639 TNTQVQAASDAVKTESENGEDGHVPLEKIMECVKSCIQVATIDDILSAKADLIHVLIISL 1698

Query: 781  SPEESWQIKLSSFLCIKELCYKFQN--SDG-NNTWPEETTYLVEELFHSTAPKVVDVIRL 837
            SP   W +K+S   C+ +LC +F +  +D  ++  P + T  V ELFHS  PK+++ I  
Sbjct: 1699 SPGFLWTVKMSGISCVGKLCSRFPSLWTDSMDDLSPSDATKFVHELFHSLVPKLLECIHT 1758

Query: 838  VKIAQVHTAASECLLELSKLYRDFPLVDRKGPKFSGELAELCESEKSEQAKAFLKQCMDI 897
            VKIAQ H AAS+CLLEL +LY     +      F  E+  L E EKSE+AK+ L++  D 
Sbjct: 1759 VKIAQFHVAASQCLLELIELYSTISSLHPVEVDFKAEVVSLLELEKSEEAKSLLRKSRDA 1818

Query: 898  LKDF 901
            L + 
Sbjct: 1819 LANL 1822



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.133    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 18,099,535
Number of extensions: 714230
Number of successful extensions: 2003
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1995
Number of HSP's successfully gapped: 1
Length of query: 912
Length of database: 11,106,569
Length adjustment: 108
Effective length of query: 804
Effective length of database: 8,145,641
Effective search space: 6549095364
Effective search space used: 6549095364
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 116 (49.3 bits)