BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0129400 Os12g0129400|011-056-A05
         (121 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os12g0129400  Nitrous oxide reductase, N-terminal domain con...   220   2e-58
Os11g0132700  Cytochrome cd1-nitrite reductase-like, C-termi...   197   1e-51

>Os12g0129400 Nitrous oxide reductase, N-terminal domain containing protein
          Length = 121

 Score =  220 bits (561), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 109/121 (90%), Positives = 109/121 (90%)

Query: 1   ILNIVLCSLTSDAHLLPVELPEISSLIVSRGIDKLAWDSSGERLALSFKDGNEMYHGLVA 60
           ILNIVLCSLTSDAHLLPVELPEISSLIVSRGIDKLAWDSSGERLALSFKDGNEMYHGLVA
Sbjct: 1   ILNIVLCSLTSDAHLLPVELPEISSLIVSRGIDKLAWDSSGERLALSFKDGNEMYHGLVA 60

Query: 61  VYDXXXXXXXXXXXXGFIRGPGDGAKPLAFAFHSKFKQGPLLSVCWSSGWCCTYPLILRP 120
           VYD            GFIRGPGDGAKPLAFAFHSKFKQGPLLSVCWSSGWCCTYPLILRP
Sbjct: 61  VYDVRRSPLVSVSLVGFIRGPGDGAKPLAFAFHSKFKQGPLLSVCWSSGWCCTYPLILRP 120

Query: 121 H 121
           H
Sbjct: 121 H 121



>Os11g0132700 Cytochrome cd1-nitrite reductase-like, C-terminal haem d1 domain
           containing protein
          Length = 443

 Score =  197 bits (501), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 96/110 (87%), Positives = 97/110 (88%)

Query: 12  DAHLLPVELPEISSLIVSRGIDKLAWDSSGERLALSFKDGNEMYHGLVAVYDXXXXXXXX 71
           DAHLLPVE PEISSLIVSRGIDKLAWDSSGERLALSFKDGNEMYHGLVAVYD        
Sbjct: 334 DAHLLPVEHPEISSLIVSRGIDKLAWDSSGERLALSFKDGNEMYHGLVAVYDVRRSPLVS 393

Query: 72  XXXXGFIRGPGDGAKPLAFAFHSKFKQGPLLSVCWSSGWCCTYPLILRPH 121
               GFIRGPG+GAKPLAFAFHSKFKQGPLLSVCWSSGWCCTYPLILRPH
Sbjct: 394 VLLVGFIRGPGEGAKPLAFAFHSKFKQGPLLSVCWSSGWCCTYPLILRPH 443



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.323    0.142    0.464 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,142,779
Number of extensions: 146117
Number of successful extensions: 224
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 224
Number of HSP's successfully gapped: 2
Length of query: 121
Length of database: 17,035,801
Length adjustment: 87
Effective length of query: 34
Effective length of database: 12,493,183
Effective search space: 424768222
Effective search space used: 424768222
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 149 (62.0 bits)