Os12g0129400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Nitrous oxide reductase, N-terminal domain containing protein.
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Os12g0129400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Nitrous oxide reductase, N-terminal domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 40.36 | 0.299 | 9.35 | 1.11 | 0.546 | -1.31 | 0.183 | 0.524 | 0.308 | 19.5 | 30.18 | 100 | -- | -- |
| 40.63 | 0.297 | 9.34 | 1.2 | 0.524 | -1.32 | 0.184 | -- | 0.324 | 19.5 | 29.8 | 125 | -- | -- |
| 40.44 | 0.296 | 9.35 | 1.11 | 0.53 | -1.32 | -- | 0.503 | 0.308 | 19.5 | 30.17 | 116 | -- | -- |
| 40.72 | 0.297 | 9.34 | 1.19 | 0.523 | -1.32 | -- | -- | 0.326 | 19.5 | 29.9 | 125 | -- | -- |
| 49.7 | 0.328 | 9.34 | 1.03 | -- | -1.66 | -- | 0.458 | 0.247 | -- | 30.81 | 293 | -- | -- |
| 63.36 | 0.373 | 9.28 | 1.52 | 0.803 | -- | 0.388 | -- | 0.581 | 17.6 | -- | -- | -- | -- |
| 63.73 | 0.374 | 9.28 | 1.52 | 0.805 | -- | -- | -- | 0.583 | 17.6 | -- | -- | -- | -- |
| 49.91 | 0.329 | 9.34 | 1.11 | -- | -1.65 | -- | -- | 0.264 | -- | 30.5 | 290 | -- | -- |
| 75.11 | 0.404 | 9.36 | -- | 0.295 | -1.69 | -- | -- | 0.147 | 20 | 29.71 | 218 | -- | -- |
| 97.41 | 0.461 | 9.27 | 1.49 | -- | -- | -- | -- | 0.563 | -- | -- | -- | -- | -- |
| 124.28 | 0.521 | 9.32 | -- | 0.781 | -- | -- | -- | 0.414 | 17.7 | -- | -- | -- | -- |
| 79.49 | 0.415 | 9.38 | -- | -- | -2 | -- | -- | 0.0656 | -- | 29.92 | 321 | -- | -- |
| 155.95 | 0.583 | 9.31 | -- | -- | -- | -- | -- | 0.398 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 37.45 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 22 |
| 14 | 39.51 | temperature | 25 | 270 | < th | dose dependent | rect. | 3 | 18 |
| 21 | 39.92 | temperature | 30 | 90 | < th | dose dependent | sin | 0 | NA |
| 25 | 40.08 | temperature | 15 | 270 | > th | dose dependent | sin | 5 | NA |
| 27 | 40.12 | temperature | 15 | 90 | > th | dose dependent | sin | 2 | NA |
| 30 | 40.15 | temperature | 15 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 48 | 40.39 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 55 | 40.42 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 62 | 40.51 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 91 | 41.02 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 92 | 41.03 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 100 | 41.11 | temperature | 30 | 270 | < th | dose dependent | sin | 4 | NA |
| 107 | 41.21 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 110 | 41.28 | temperature | 10 | 90 | > th | dose dependent | no | NA | NA |
| 117 | 41.33 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 128 | 41.40 | temperature | 10 | 270 | > th | dose dependent | rect. | 4 | 23 |
| 155 | 41.65 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 180 | 41.88 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 6 |
| 183 | 41.90 | temperature | 30 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 246 | 42.29 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 15 |
| 283 | 42.43 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 314 | 42.55 | temperature | 30 | 10 | < th | dose dependent | rect. | 6 | 16 |
| 316 | 42.56 | temperature | 25 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 329 | 42.60 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 5 |
| 343 | 42.62 | temperature | 30 | 720 | < th | dose dependent | rect. | 20 | 18 |
| 370 | 42.67 | temperature | 25 | 1440 | < th | dose dependent | sin | 16 | NA |
| 371 | 42.67 | temperature | 15 | 720 | > th | dose dependent | rect. | 18 | 17 |
| 390 | 42.70 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 23 |
| 393 | 42.70 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 23 |
| 398 | 42.71 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 423 | 42.75 | temperature | 25 | 720 | < th | dose dependent | rect. | 17 | 20 |
| 435 | 42.76 | temperature | 30 | 270 | < th | dose dependent | rect. | 11 | 23 |
| 464 | 42.81 | temperature | 20 | 90 | > th | dose dependent | rect. | 23 | 23 |
| 507 | 42.88 | temperature | 25 | 4320 | < th | dose dependent | rect. | 3 | 1 |
| 540 | 42.92 | temperature | 25 | 1440 | < th | dose dependent | rect. | 10 | 19 |
| 627 | 43.01 | temperature | 10 | 4320 | > th | dose dependent | rect. | 1 | 1 |
| 633 | 43.01 | temperature | 20 | 10 | > th | dose dependent | rect. | 2 | 23 |
| 642 | 43.03 | temperature | 10 | 4320 | > th | dose dependent | rect. | 24 | 5 |
| 659 | 43.05 | temperature | 10 | 4320 | > th | dose dependent | rect. | 3 | 1 |
| 734 | 43.11 | temperature | 10 | 4320 | > th | dose dependent | rect. | 21 | 8 |
| 955 | 43.32 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 3 |
| 967 | 43.32 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 23 |