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Os11g0132700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cytochrome cd1-nitrite reductase-like, C-terminal haem d1 domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.21 (0.0203) R2 : 0.0133
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.106 (0.0426) R2dN8 : 0.0172 R2N8 : 0.0133
σ : 0.381
deviance : 66.8
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
39.9 0.297 9.24 0.0439 0.673 0.861 0.372 1.15 0.0869 21 8.197 79 -- --
41.72 0.301 9.23 0.055 0.653 0.777 -0.0892 -- 0.0851 20.9 6.928 92 -- --
40.22 0.295 9.23 0.0457 0.652 0.852 -- 1.02 0.0952 20.7 12.28 76 -- --
41.66 0.301 9.23 0.0669 0.672 0.795 -- -- 0.0937 20.9 6.722 70 -- --
58.24 0.355 9.22 0.0519 -- 0.616 -- 0.903 0.078 -- 30 200 -- --
50.25 0.332 9.22 0.0657 0.562 -- 0.142 -- 0.123 18.5 -- -- -- --
50.3 0.332 9.22 0.0636 0.562 -- -- -- 0.123 18.5 -- -- -- --
51.99 0.336 9.22 0.0113 -- 0.635 -- -- 0.0451 -- -2.108 809 -- --
41.76 0.301 9.23 -- 0.669 0.79 -- -- 0.0887 20.8 6.791 70 -- --
66.74 0.382 9.21 0.0495 -- -- -- -- 0.111 -- -- -- -- --
50.41 0.332 9.22 -- 0.561 -- -- -- 0.116 18.5 -- -- -- --
52 0.336 9.23 -- -- 0.636 -- -- 0.0438 -- -2.311 809 -- --
66.8 0.381 9.21 -- -- -- -- -- 0.106 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 36.10 temperature 15.0 90 > th dose dependent rect. 8 7
5 36.63 radiation 40.0 90 < th dose independent rect. 4 15
7 36.82 temperature 10.0 10 > th dose dependent rect. 9 7
15 37.29 radiation 40.0 270 < th dose independent rect. 2 15
18 37.34 radiation 40.0 10 < th dose independent rect. 4 16
22 37.54 radiation 40.0 90 < th dose dependent rect. 4 15
26 37.61 radiation 1.0 90 > th dose dependent rect. 8 7
39 37.82 radiation 10.0 270 > th dose independent rect. 7 6
55 37.92 radiation 40.0 10 < th dose dependent rect. 4 16
56 37.92 temperature 10.0 10 > th dose dependent rect. 16 17
81 38.11 temperature 10.0 90 > th dose dependent rect. 15 17
82 38.13 wind 7.0 270 < th dose independent rect. 7 7
84 38.15 temperature 30.0 270 < th dose independent rect. 18 9
94 38.24 humidity 90.0 90 < th dose independent rect. 8 7
113 38.33 radiation 1.0 10 > th dose dependent rect. 9 7
114 38.34 humidity 60.0 270 > th dose independent rect. 18 9
121 38.38 radiation 40.0 270 < th dose dependent rect. 2 15
130 38.43 radiation 1.0 270 < th dose dependent rect. 18 9
134 38.49 temperature 15.0 270 > th dose independent rect. 7 7
136 38.50 radiation 1.0 270 < th dose independent rect. 18 9
138 38.55 radiation 30.0 90 < th dose independent rect. 15 18
155 38.71 humidity 90.0 10 < th dose independent rect. 9 7
166 38.77 temperature 15.0 270 > th dose independent rect. 18 9
204 38.84 wind 7.0 10 < th dose independent rect. 9 7
210 38.86 radiation 20.0 270 < th dose dependent rect. 2 11
215 38.88 radiation 20.0 270 < th dose dependent rect. 2 9
229 38.89 wind 9.0 270 < th dose independent rect. 18 9
235 38.90 radiation 20.0 270 < th dose independent rect. 18 9
238 38.90 temperature 10.0 270 > th dose independent rect. 3 15
239 38.90 atmosphere 1015.0 270 < th dose independent rect. 3 15
274 39.00 atmosphere 995.0 270 > th dose independent rect. 18 9
295 39.04 radiation 1.0 90 > th dose dependent sin 1 NA
298 39.05 radiation 1.0 270 > th dose dependent sin 7 NA
302 39.06 precipitation 0.1 270 < th dose independent rect. 3 15
304 39.06 precipitation 0.1 270 < th dose dependent rect. 3 15
308 39.10 radiation 30.0 90 < th dose independent rect. 13 22
322 39.16 precipitation 0.1 270 < th dose independent rect. 7 7
324 39.16 precipitation 0.1 270 < th dose dependent rect. 7 7
343 39.18 precipitation 0.1 270 < th dose independent rect. 14 17
349 39.18 precipitation 0.1 270 < th dose dependent rect. 14 17
357 39.22 humidity 90.0 90 < th dose dependent rect. 8 7
369 39.26 radiation 30.0 90 < th dose independent rect. 15 20
380 39.29 radiation 20.0 270 < th dose independent rect. 1 8
383 39.29 radiation 30.0 270 < th dose dependent sin 5 NA
387 39.31 atmosphere 995.0 270 > th dose independent rect. 7 7
388 39.31 atmosphere 1015.0 270 < th dose independent rect. 7 7
389 39.31 temperature 10.0 270 > th dose independent rect. 14 17
449 39.39 humidity 90.0 90 < th dose dependent rect. 20 19
462 39.42 wind 9.0 270 < th dose dependent rect. 7 7
486 39.45 radiation 40.0 10 < th dose dependent sin 22 NA
518 39.50 precipitation 0.1 270 < th dose independent rect. 18 9
520 39.50 precipitation 0.1 270 < th dose dependent rect. 18 9
521 39.51 wind 9.0 270 < th dose independent rect. 14 17
529 39.52 temperature 10.0 10 > th dose independent rect. 9 7
532 39.52 atmosphere 1015.0 10 < th dose independent rect. 9 7
533 39.52 precipitation 0.1 10 < th dose independent rect. 9 7
535 39.52 temperature 10.0 10 > th dose independent rect. 16 17
538 39.52 precipitation 0.1 10 < th dose dependent rect. 9 7
545 39.54 radiation 40.0 90 < th dose independent rect. 11 23
548 39.55 radiation 40.0 270 < th dose independent rect. 11 20
565 39.58 temperature 15.0 270 > th dose independent rect. 7 19
576 39.60 wind 1.0 270 > th dose independent rect. 7 7
582 39.61 radiation 10.0 270 < th dose independent rect. 2 6
585 39.61 atmosphere 995.0 10 > th dose independent rect. 9 7
586 39.61 radiation 1.0 10 > th dose independent rect. 9 7
595 39.63 radiation 40.0 90 < th dose dependent rect. 15 18
647 39.70 wind 9.0 270 < th dose independent rect. 3 15
648 39.70 radiation 40.0 90 < th dose dependent sin 1 NA
654 39.71 wind 9.0 10 < th dose independent rect. 16 17
655 39.71 radiation 40.0 10 < th dose independent rect. 16 17
673 39.74 radiation 1.0 10 > th dose dependent sin 22 NA
686 39.76 radiation 40.0 90 < th dose dependent rect. 15 20
687 39.76 radiation 40.0 90 < th dose dependent rect. 13 22
688 39.77 radiation 10.0 270 > th dose independent sin 5 NA
711 39.79 atmosphere 995.0 10 > th dose independent rect. 16 17
768 39.83 temperature 15.0 270 > th dose independent rect. 8 17
828 39.89 wind 1.0 10 > th dose independent rect. 9 7
887 39.93 temperature 10.0 270 > th dose dependent rect. 2 5
905 39.96 atmosphere 995.0 90 > th dose independent rect. 15 17
980 40.00 humidity 90.0 10 < th dose dependent rect. 9 7