BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0129100 Os12g0129100|Os12g0129100
(191 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0129100 266 5e-72
Os08g0338500 Pectinesterase inhibitor domain containing pro... 90 8e-19
Os11g0132100 Pectinesterase inhibitor domain containing pro... 90 1e-18
>Os12g0129100
Length = 191
Score = 266 bits (681), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 137/191 (71%), Positives = 137/191 (71%)
Query: 1 MVSSHGIXXXXXXXXXXXXXXXXXXXXXXXDSFMSGACKXXXXXXXXXXXXTFCMXXXXX 60
MVSSHGI DSFMSGACK TFCM
Sbjct: 1 MVSSHGIVNAFFLFAVALVAASQAQHAANADSFMSGACKIVAGSSSGVISVTFCMDALGS 60
Query: 61 XXXXXXXXXXXXXXIIAIDLLTSNTTSTKAKIDNILKDDGNGLKPGDATTVCFQSCQAAY 120
IIAIDLLTSNTTSTKAKIDNILKDDGNGLKPGDATTVCFQSCQAAY
Sbjct: 61 DSRSLSASYYSDLAIIAIDLLTSNTTSTKAKIDNILKDDGNGLKPGDATTVCFQSCQAAY 120
Query: 121 ASVLQGQLGIFYNVQAGRFPEAMSALEKAANMVEECEKGFGKSNVKSLLTTENHDSFELA 180
ASVLQGQLGIFYNVQAGRFPEAMSALEKAANMVEECEKGFGKSNVKSLLTTENHDSFELA
Sbjct: 121 ASVLQGQLGIFYNVQAGRFPEAMSALEKAANMVEECEKGFGKSNVKSLLTTENHDSFELA 180
Query: 181 KLGALLLNEEH 191
KLGALLLNEEH
Sbjct: 181 KLGALLLNEEH 191
>Os08g0338500 Pectinesterase inhibitor domain containing protein
Length = 197
Score = 90.1 bits (222), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 50/113 (44%), Positives = 67/113 (59%)
Query: 76 IAIDLLTSNTTSTKAKIDNILKDDGNGLKPGDATTVCFQSCQAAYASVLQGQLGIFYNVQ 135
+A+ LLT+N TST KID +L+ G G K AT C +SC+A YA + + Q G V+
Sbjct: 83 VAVGLLTANATSTSVKIDALLRGGGGGGKVDAATARCLRSCRALYAGIARRQPGCAAAVR 142
Query: 136 AGRFPEAMSALEKAANMVEECEKGFGKSNVKSLLTTENHDSFELAKLGALLLN 188
GR EA S+LE++A CE GF N S +T E+ +F+LAKLG LL
Sbjct: 143 GGRLGEARSSLEESAAAARRCEDGFRGGNATSPVTAEDDAAFKLAKLGVALLG 195
>Os11g0132100 Pectinesterase inhibitor domain containing protein
Length = 165
Score = 89.7 bits (221), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/121 (43%), Positives = 68/121 (56%), Gaps = 2/121 (1%)
Query: 31 DSFMSGACKXXXXXXXXXXXXTFCMXXXXXXXXXXXXXXXXXXXIIAIDLLTSNTTSTKA 90
DS + GACK TFC+ ++ +DL+T+N TSTK+
Sbjct: 27 DSALYGACKTVAGNSGVVSV-TFCIYALSSDNRSHDAAGFKDYAVVTVDLITANATSTKS 85
Query: 91 KIDNILKDDGNGLKPGDATTVCFQSCQAAYASVLQGQLGIFYNVQAGRFPEAMSALEKAA 150
KID IL++ G G DA C QSCQAAYA VL+ Q GI +VQ GR PEA+SALEK+A
Sbjct: 86 KIDGILQNGGGGGAG-DAKRRCLQSCQAAYAGVLRAQPGIVADVQGGRLPEAISALEKSA 144
Query: 151 N 151
+
Sbjct: 145 S 145
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.130 0.371
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,884,462
Number of extensions: 118164
Number of successful extensions: 299
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 297
Number of HSP's successfully gapped: 3
Length of query: 191
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 96
Effective length of database: 12,075,471
Effective search space: 1159245216
Effective search space used: 1159245216
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 153 (63.5 bits)