BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0129000 Os12g0129000|015-095-B04
(210 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0129000 Protein of unknown function DUF872, eukaryotic... 308 2e-84
Os11g0132400 Protein of unknown function DUF872, eukaryotic... 112 1e-25
>Os12g0129000 Protein of unknown function DUF872, eukaryotic family protein
Length = 210
Score = 308 bits (788), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 160/210 (76%), Positives = 160/210 (76%)
Query: 1 MSNSXXXXIPNPPAYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHRVLRGCHHLLNPASH 60
MSNS IPNPPAY HRVLRGCHHLLNPASH
Sbjct: 1 MSNSKKKKIPNPPAYRVSPPPIRRSPRPPPRRDRSPPRRPPARRHRVLRGCHHLLNPASH 60
Query: 61 HPIARWPPSSTVCLLSPLHHRGTSPSRKKRHCTMASRRNVRGYAPLPTEDRDDSNLTDDV 120
HPIARWPPSSTVCLLSPLHHRGTSPSRKKRHCTMASRRNVRGYAPLPTEDRDDSNLTDDV
Sbjct: 61 HPIARWPPSSTVCLLSPLHHRGTSPSRKKRHCTMASRRNVRGYAPLPTEDRDDSNLTDDV 120
Query: 121 DLRFTYTPKSLRKIPWKSIXXXXXXXXXXXXXXXXXYFIFTGHMEGDNSQAYGLLFLGIL 180
DLRFTYTPKSLRKIPWKSI YFIFTGHMEGDNSQAYGLLFLGIL
Sbjct: 121 DLRFTYTPKSLRKIPWKSIALALFLLLLGCSLLFLSYFIFTGHMEGDNSQAYGLLFLGIL 180
Query: 181 AFLPGFYETRVAYYSSRGAPGYTFASIPDY 210
AFLPGFYETRVAYYSSRGAPGYTFASIPDY
Sbjct: 181 AFLPGFYETRVAYYSSRGAPGYTFASIPDY 210
>Os11g0132400 Protein of unknown function DUF872, eukaryotic family protein
Length = 54
Score = 112 bits (281), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 54/54 (100%), Positives = 54/54 (100%)
Query: 157 YFIFTGHMEGDNSQAYGLLFLGILAFLPGFYETRVAYYSSRGAPGYTFASIPDY 210
YFIFTGHMEGDNSQAYGLLFLGILAFLPGFYETRVAYYSSRGAPGYTFASIPDY
Sbjct: 1 YFIFTGHMEGDNSQAYGLLFLGILAFLPGFYETRVAYYSSRGAPGYTFASIPDY 54
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.138 0.450
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,572,521
Number of extensions: 249598
Number of successful extensions: 646
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 644
Number of HSP's successfully gapped: 2
Length of query: 210
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 114
Effective length of database: 12,023,257
Effective search space: 1370651298
Effective search space used: 1370651298
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 154 (63.9 bits)