Os12g0129000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF872, eukaryotic family protein.
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Os12g0129000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF872, eukaryotic family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 24.98 | 0.235 | 10.4 | 0.48 | 0.33 | -0.718 | -0.567 | 1.43 | 0.0722 | 12.9 | 19.32 | 103 | -- | -- |
| 26.28 | 0.239 | 10.4 | 0.236 | 0.322 | -0.67 | -0.254 | -- | 0.0124 | 12.6 | 17.71 | 89 | -- | -- |
| 25.97 | 0.237 | 10.4 | 0.354 | 0.327 | -0.691 | -- | 0.834 | 0.0447 | 12.9 | 19.3 | 100 | -- | -- |
| 26.37 | 0.239 | 10.4 | 0.239 | 0.347 | -0.82 | -- | -- | 0.00838 | 12.7 | 15.02 | 67 | -- | -- |
| 27.12 | 0.243 | 10.4 | 0.541 | -- | -0.598 | -- | 1.48 | 0.0567 | -- | 17.54 | 777 | -- | -- |
| 32.78 | 0.268 | 10.4 | 0.0752 | 0.187 | -- | -0.329 | -- | -0.112 | 10 | -- | -- | -- | -- |
| 33.2 | 0.27 | 10.4 | 0.062 | 0.19 | -- | -- | -- | -0.113 | 9.85 | -- | -- | -- | -- |
| 28.77 | 0.25 | 10.4 | 0.227 | -- | -0.646 | -- | -- | -0.0138 | -- | 14.05 | 773 | -- | -- |
| 27.65 | 0.246 | 10.4 | -- | 0.33 | -0.712 | -- | -- | -0.0333 | 12.2 | 15.02 | 67 | -- | -- |
| 35.35 | 0.278 | 10.5 | 0.06 | -- | -- | -- | -- | -0.113 | -- | -- | -- | -- | -- |
| 33.3 | 0.27 | 10.4 | -- | 0.189 | -- | -- | -- | -0.12 | 9.83 | -- | -- | -- | -- |
| 29.98 | 0.255 | 10.4 | -- | -- | -0.56 | -- | -- | -0.0503 | -- | 13.47 | 733 | -- | -- |
| 35.44 | 0.278 | 10.5 | -- | -- | -- | -- | -- | -0.12 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 23.89 | temperature | 20 | 270 | > th | dose dependent | rect. | 16 | 22 |
| 4 | 24.19 | humidity | 90 | 14400 | > th | dose dependent | rect. | 18 | 13 |
| 5 | 24.22 | humidity | 90 | 14400 | > th | dose dependent | rect. | 20 | 11 |
| 16 | 24.28 | humidity | 90 | 14400 | > th | dose dependent | sin | 11 | NA |
| 24 | 24.30 | temperature | 10 | 720 | > th | dose dependent | rect. | 22 | 14 |
| 29 | 24.32 | humidity | 90 | 14400 | > th | dose dependent | rect. | 21 | 6 |
| 37 | 24.34 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 11 |
| 50 | 24.39 | humidity | 90 | 14400 | > th | dose dependent | rect. | 4 | 3 |
| 80 | 24.45 | temperature | 20 | 720 | > th | dose dependent | rect. | 22 | 14 |
| 85 | 24.46 | temperature | 20 | 90 | > th | dose dependent | rect. | 6 | 23 |
| 104 | 24.51 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 3 |
| 130 | 24.56 | temperature | 30 | 720 | < th | dose dependent | rect. | 4 | 5 |
| 142 | 24.59 | humidity | 90 | 14400 | > th | dose dependent | rect. | 2 | 8 |
| 209 | 24.72 | temperature | 30 | 720 | < th | dose dependent | rect. | 5 | 2 |
| 210 | 24.72 | temperature | 30 | 720 | < th | dose dependent | rect. | 4 | 7 |
| 235 | 24.76 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 22 |
| 283 | 24.84 | temperature | 15 | 720 | > th | dose dependent | rect. | 6 | 6 |
| 301 | 24.87 | temperature | 30 | 720 | < th | dose dependent | rect. | 4 | 9 |
| 310 | 24.89 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 320 | 24.91 | temperature | 20 | 90 | > th | dose dependent | rect. | 1 | 23 |
| 328 | 24.93 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 330 | 24.93 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 3 |
| 335 | 24.94 | humidity | 90 | 14400 | > th | dose dependent | no | NA | NA |
| 344 | 24.95 | temperature | 20 | 270 | > th | dose dependent | sin | 5 | NA |
| 345 | 24.95 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 8 |
| 353 | 24.96 | temperature | 20 | 90 | > th | dose dependent | rect. | 7 | 16 |
| 361 | 24.98 | temperature | 25 | 270 | > th | dose dependent | sin | 8 | NA |
| 363 | 24.98 | temperature | 15 | 1440 | > th | dose dependent | rect. | 3 | 1 |
| 375 | 24.99 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 3 |
| 383 | 25.00 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 3 |
| 400 | 25.02 | temperature | 10 | 90 | > th | dose dependent | sin | 2 | NA |
| 428 | 25.04 | temperature | 30 | 720 | < th | dose dependent | sin | 5 | NA |
| 436 | 25.04 | temperature | 15 | 1440 | > th | dose dependent | rect. | 21 | 8 |
| 469 | 25.06 | temperature | 20 | 90 | > th | dose dependent | no | NA | NA |
| 484 | 25.06 | temperature | 30 | 270 | < th | dose dependent | rect. | 20 | 23 |
| 496 | 25.07 | temperature | 30 | 720 | < th | dose dependent | rect. | 20 | 17 |
| 539 | 25.10 | temperature | 30 | 270 | < th | dose dependent | rect. | 18 | 23 |
| 542 | 25.11 | temperature | 10 | 270 | > th | dose dependent | sin | 5 | NA |
| 683 | 25.16 | temperature | 30 | 270 | < th | dose dependent | rect. | 21 | 20 |
| 704 | 25.17 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 12 |
| 711 | 25.18 | temperature | 25 | 1440 | < th | dose dependent | sin | 10 | NA |
| 715 | 25.18 | temperature | 25 | 270 | > th | dose dependent | rect. | 7 | 4 |
| 811 | 25.22 | temperature | 30 | 270 | < th | dose dependent | rect. | 2 | 23 |
| 830 | 25.24 | temperature | 15 | 1440 | > th | dose dependent | sin | 10 | NA |
| 982 | 25.32 | temperature | 25 | 1440 | < th | dose dependent | rect. | 7 | 1 |
| 1000 | 25.33 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |