BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0129000 Os12g0129000|015-095-B04
         (210 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G29170.1  | chr3:11136240-11137542 REVERSE LENGTH=122          113   7e-26
AT4G29850.1  | chr4:14601818-14602874 REVERSE LENGTH=104           50   1e-06
AT2G19350.1  | chr2:8376329-8377097 FORWARD LENGTH=104             47   5e-06

>AT3G29170.1 | chr3:11136240-11137542 REVERSE LENGTH=122
          Length = 121

 Score =  113 bits (282), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 67/123 (54%), Positives = 77/123 (62%), Gaps = 8/123 (6%)

Query: 94  MASRRNVRGYAPLPTEDRDDSNLTD------DVDLRFTYTPKSLRKIPWKSIXXXXXXXX 147
           MASRR+VR YA LP  D DD    +      D D RF Y+PK+  ++PWKSI        
Sbjct: 1   MASRRSVR-YAQLPG-DEDDEGYGNGVGERRDFDPRFDYSPKAFDRVPWKSIALAVFLLF 58

Query: 148 XXXXXXXXXYFIFTGHMEGDNSQAYGLLFLGILAFLPGFYETRVAYYSSRGAPGYTFASI 207
                    +FIF GHMEGD+SQ Y LL LGIL FLPGFYETR+AYYS RGA GY FA+I
Sbjct: 59  LGCLLLLLSFFIFIGHMEGDSSQGYALLVLGILTFLPGFYETRIAYYSWRGAEGYRFAAI 118

Query: 208 PDY 210
           P Y
Sbjct: 119 PSY 121



>AT4G29850.1 | chr4:14601818-14602874 REVERSE LENGTH=104
          Length = 103

 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 2/99 (2%)

Query: 110 DRDDSNLTDDVDLRFTYTPKSLRKIPWKSIXXXXXXXXXXXXXXXXXYFIFTGHMEGDNS 169
           D   S   +D+ +  +YT  +  + P K I                 +F+    + GD  
Sbjct: 5   DHAFSITDEDIMIETSYTVNN--RPPVKEIALAVALLVFGTLGIVSGFFMAYNRVGGDRG 62

Query: 170 QAYGLLFLGILAFLPGFYETRVAYYSSRGAPGYTFASIP 208
                + LG L F+PGFY TR+AYY+ +G  G++F++IP
Sbjct: 63  HGIFFIVLGCLLFIPGFYYTRIAYYAYKGYKGFSFSNIP 101



>AT2G19350.1 | chr2:8376329-8377097 FORWARD LENGTH=104
          Length = 103

 Score = 47.4 bits (111), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 36/74 (48%)

Query: 135 PWKSIXXXXXXXXXXXXXXXXXYFIFTGHMEGDNSQAYGLLFLGILAFLPGFYETRVAYY 194
           P K I                 +F+    + GD       + LG L F+PGFY TR+AYY
Sbjct: 28  PVKEISLAVGLLVFGTLGIVLGFFMAYNRVGGDRGHGIFFIVLGCLLFIPGFYYTRIAYY 87

Query: 195 SSRGAPGYTFASIP 208
           + +G  G++F++IP
Sbjct: 88  AYKGYKGFSFSNIP 101



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.322    0.138    0.450 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,008,340
Number of extensions: 148364
Number of successful extensions: 262
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 261
Number of HSP's successfully gapped: 3
Length of query: 210
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 116
Effective length of database: 8,529,465
Effective search space: 989417940
Effective search space used: 989417940
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 109 (46.6 bits)