BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0127100 Os12g0127100|Os12g0127100
         (329 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os12g0127100  Nse1 non-SMC component of SMC5-6 complex famil...   683   0.0  
Os11g0130300  Nse1 non-SMC component of SMC5-6 complex famil...   639   0.0  

>Os12g0127100 Nse1 non-SMC component of SMC5-6 complex family protein
          Length = 329

 Score =  683 bits (1763), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/329 (100%), Positives = 329/329 (100%)

Query: 1   MAPLSWRHHTLLQALLSRGPLSERDFHALFSAISGGKNPATHRHLFNDTLLKINKELAYL 60
           MAPLSWRHHTLLQALLSRGPLSERDFHALFSAISGGKNPATHRHLFNDTLLKINKELAYL
Sbjct: 1   MAPLSWRHHTLLQALLSRGPLSERDFHALFSAISGGKNPATHRHLFNDTLLKINKELAYL 60

Query: 61  QFELRAGINQYDGTVYYGVVNNIADEESKLGSKFSVPQIAFYKGLLEAIVHEAGNDGSIT 120
           QFELRAGINQYDGTVYYGVVNNIADEESKLGSKFSVPQIAFYKGLLEAIVHEAGNDGSIT
Sbjct: 61  QFELRAGINQYDGTVYYGVVNNIADEESKLGSKFSVPQIAFYKGLLEAIVHEAGNDGSIT 120

Query: 121 NIDALNTRIENQVVIADASQGSQSRLPTSITNFSLSQKEKTLNELIQDRWLSYTPTGKIG 180
           NIDALNTRIENQVVIADASQGSQSRLPTSITNFSLSQKEKTLNELIQDRWLSYTPTGKIG
Sbjct: 121 NIDALNTRIENQVVIADASQGSQSRLPTSITNFSLSQKEKTLNELIQDRWLSYTPTGKIG 180

Query: 181 LGIRSFLDLRSWLRSNDIPSCEVCNEACIKASSCPNEGCNVRIHVYCLKKKFSQRKASRA 240
           LGIRSFLDLRSWLRSNDIPSCEVCNEACIKASSCPNEGCNVRIHVYCLKKKFSQRKASRA
Sbjct: 181 LGIRSFLDLRSWLRSNDIPSCEVCNEACIKASSCPNEGCNVRIHVYCLKKKFSQRKASRA 240

Query: 241 CGCGTEWPRLEGEDDGAEDVNEPEEDQVPSANQHSRTRRRGVKSELVEENERAGPSARMT 300
           CGCGTEWPRLEGEDDGAEDVNEPEEDQVPSANQHSRTRRRGVKSELVEENERAGPSARMT
Sbjct: 241 CGCGTEWPRLEGEDDGAEDVNEPEEDQVPSANQHSRTRRRGVKSELVEENERAGPSARMT 300

Query: 301 RRSLRSSKAEAVEAAQELWYSIREHRQLA 329
           RRSLRSSKAEAVEAAQELWYSIREHRQLA
Sbjct: 301 RRSLRSSKAEAVEAAQELWYSIREHRQLA 329



>Os11g0130300 Nse1 non-SMC component of SMC5-6 complex family protein
          Length = 338

 Score =  639 bits (1648), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 310/320 (96%), Positives = 313/320 (97%), Gaps = 2/320 (0%)

Query: 1   MAPLSWRHHTLLQALLSRGPLSERDFHALFSAISGGKNPATHRHLFNDTLLKINKELAYL 60
           MAPLSWRHHTLLQALLSRGPLSERDFHALFSAISGGKNPATHR LF+DTLLKINKEL YL
Sbjct: 1   MAPLSWRHHTLLQALLSRGPLSERDFHALFSAISGGKNPATHRQLFDDTLLKINKELTYL 60

Query: 61  QFELRAGINQYDGTVYYGVVNNIADEESKLGSKFSVPQIAFYKGLLEAIVHEAGNDGSIT 120
           QFELRAGINQYDGTVYYGVVNNIADEESKLGSKFSVPQIAFYKGLLEAIVHEAGNDGSIT
Sbjct: 61  QFELRAGINQYDGTVYYGVVNNIADEESKLGSKFSVPQIAFYKGLLEAIVHEAGNDGSIT 120

Query: 121 NIDALNTRIENQVVIADASQGSQSRLPTSITNFSLSQKEKTLNELIQDRWLSYTPTGKIG 180
           NIDALNTRIENQVVIADASQGSQSRLPTSITNFSLSQKEKTLNELIQDRWLSYTPTGKIG
Sbjct: 121 NIDALNTRIENQVVIADASQGSQSRLPTSITNFSLSQKEKTLNELIQDRWLSYTPTGKIG 180

Query: 181 LGIRSFLDLRSWLRSNDIPSCEVCNEACIKASSCPNEGCNVRIHVYCLKKKFSQRKASRA 240
           LGIRSFLDLRSWLRSNDIPSCEVCNEACIKAS CPNE CNVRIH YCLKKKFSQRKASRA
Sbjct: 181 LGIRSFLDLRSWLRSNDIPSCEVCNEACIKASCCPNEECNVRIHGYCLKKKFSQRKASRA 240

Query: 241 CGCGTEWPRLEGEDDGA--EDVNEPEEDQVPSANQHSRTRRRGVKSELVEENERAGPSAR 298
           CGCGTEWPRLEGEDDGA  EDVNEPEEDQVPSANQHSRTRRRGVKSELVEENERAGPSAR
Sbjct: 241 CGCGTEWPRLEGEDDGAEDEDVNEPEEDQVPSANQHSRTRRRGVKSELVEENERAGPSAR 300

Query: 299 MTRRSLRSSKAEAVEAAQEL 318
           MTRR+LRSSKAEAVEAAQE+
Sbjct: 301 MTRRALRSSKAEAVEAAQEV 320



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.315    0.131    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,275,587
Number of extensions: 472797
Number of successful extensions: 1652
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1651
Number of HSP's successfully gapped: 2
Length of query: 329
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 228
Effective length of database: 11,762,187
Effective search space: 2681778636
Effective search space used: 2681778636
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 156 (64.7 bits)