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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0127100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Nse1 non-SMC component of SMC5-6 complex family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.19 (0.0346) R2 : 0.775
β1 : 1.6 (0.127) R2dD : 0.0811 R2D : 0.0587
β2 : 3.09 (0.0902) R2dC : 0.583 R2C : 0.595
β3 : -1.46 (0.104) R2dE : 0.0985 R2E : 0.125
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.357 (0.0739) R2dN8 : 0.0157 R2N8 : -0.00664
σ : 0.647
deviance : 193.11
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_____
C
peak time of C : 17.2
E
wheather : radiation
threshold : 0.2011
memory length : 305
response mode : > th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 3.84
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
186.66 0.642 5.19 1.59 3.1 -1.38 0.476 -1.65 0.362 17.3 0.26 297 4.12 --
192.38 0.646 5.19 1.6 3.1 -1.42 0.57 -- 0.36 17.3 0.2097 305 4.02 --
187.06 0.637 5.19 1.6 3.1 -1.4 -- -1.65 0.371 17.2 0.2005 299 3.96 --
193.11 0.647 5.19 1.6 3.09 -1.46 -- -- 0.357 17.2 0.2011 305 3.84 --
227.17 0.702 5.12 1.57 -- -3.22 -- 0.979 0.407 -- -32.17 1500 0.239 --
217.78 0.692 5.22 1.57 3.35 -- 0.834 -- 0.337 18.3 -- -- -- --
219.48 0.694 5.22 1.56 3.35 -- -- -- 0.34 18.3 -- -- -- --
219.48 0.69 5.14 1.56 -- -3.35 -- -- 0.34 -- -26.92 1521 0.371 --
259.8 0.751 5.22 -- 3.01 -1.54 -- -- 0.206 17.2 1.01 283 3.77 --
802.55 1.32 5.15 1.47 -- -- -- -- 0.268 -- -- -- -- --
283.27 0.787 5.25 -- 3.33 -- -- -- 0.167 18.3 -- -- -- --
283.27 0.784 5.18 -- -- -3.32 -- -- 0.167 -- -19.19 1534 0.454 --
859.26 1.37 5.19 -- -- -- -- -- 0.105 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 178.49 temperature 15.0 270 > th dose independent rect. 8 23
2 179.02 radiation 30.0 270 < th dose independent rect. 7 1
3 179.39 humidity 60.0 90 > th dose independent rect. 7 4
4 179.40 temperature 15.0 1440 > th dose independent rect. 8 4
5 179.52 humidity 50.0 270 > th dose dependent rect. 7 1
6 179.65 wind 9.0 270 < th dose independent rect. 8 23
7 179.77 humidity 70.0 270 > th dose independent rect. 7 1
8 180.05 humidity 60.0 10 > th dose independent rect. 7 5
9 180.11 humidity 50.0 270 > th dose dependent rect. 6 3
12 180.60 wind 7.0 270 < th dose independent rect. 7 1
14 180.73 temperature 10.0 270 > th dose independent rect. 7 1
16 180.73 temperature 30.0 270 < th dose independent rect. 7 1
17 180.73 humidity 50.0 270 > th dose independent rect. 7 1
19 180.73 atmosphere 995.0 270 > th dose independent rect. 7 1
20 180.73 atmosphere 1015.0 270 < th dose independent rect. 7 1
22 180.74 temperature 20.0 90 > th dose independent rect. 7 4
23 180.82 radiation 30.0 270 < th dose independent rect. 6 3
24 180.92 precipitation 0.1 270 < th dose independent rect. 7 1
25 180.92 precipitation 0.1 270 < th dose dependent rect. 7 1
27 181.01 temperature 15.0 1440 > th dose independent rect. 8 16
34 181.64 temperature 15.0 90 > th dose independent rect. 11 20
35 181.68 wind 9.0 270 < th dose dependent rect. 7 1
36 181.71 temperature 10.0 270 > th dose dependent rect. 7 1
40 181.86 wind 9.0 270 < th dose independent rect. 9 21
41 182.00 wind 7.0 90 < th dose independent rect. 11 20
44 182.18 humidity 50.0 30 > th dose dependent rect. 7 5
45 182.20 precipitation 0.1 270 < th dose independent rect. 9 21
46 182.20 precipitation 0.1 270 < th dose dependent rect. 9 21
47 182.27 wind 9.0 90 < th dose dependent rect. 7 4
52 182.47 wind 7.0 270 < th dose independent rect. 6 3
53 182.47 radiation 10.0 90 < th dose independent rect. 23 8
55 182.54 temperature 10.0 90 > th dose independent rect. 7 4
56 182.54 atmosphere 995.0 90 > th dose independent rect. 7 4
57 182.54 atmosphere 1015.0 90 < th dose independent rect. 7 4
60 182.58 temperature 30.0 270 < th dose independent rect. 6 3
61 182.61 atmosphere 1015.0 90 < th dose independent rect. 7 16
62 182.63 precipitation 0.1 90 < th dose independent rect. 7 4
63 182.63 precipitation 0.1 90 < th dose dependent rect. 7 4
72 182.65 temperature 15.0 270 > th dose independent rect. 15 10
75 182.72 radiation 40.0 270 < th dose dependent rect. 7 1
88 183.33 temperature 15.0 270 > th dose independent rect. 17 16
95 183.64 atmosphere 1015.0 90 < th dose dependent rect. 7 4
96 183.69 humidity 50.0 90 > th dose dependent rect. 23 8
97 183.76 radiation 40.0 270 < th dose dependent rect. 6 3
99 183.78 temperature 15.0 90 > th dose independent rect. 7 16
102 183.87 precipitation 0.1 90 < th dose independent rect. 11 20
103 183.87 precipitation 0.1 90 < th dose dependent rect. 11 20
105 183.94 wind 7.0 90 < th dose independent rect. 23 8
107 183.96 atmosphere 1015.0 270 < th dose dependent rect. 7 1
109 184.11 radiation 40.0 90 < th dose dependent rect. 23 8
110 184.12 humidity 70.0 90 > th dose independent rect. 23 8
115 184.20 temperature 10.0 90 > th dose independent rect. 23 8
116 184.20 temperature 30.0 90 < th dose independent rect. 23 8
117 184.20 humidity 50.0 90 > th dose independent rect. 23 8
119 184.20 atmosphere 995.0 90 > th dose independent rect. 23 8
125 184.38 wind 1.0 90 > th dose independent rect. 7 4
126 184.42 atmosphere 1010.0 270 < th dose independent rect. 15 10
127 184.44 temperature 10.0 90 > th dose dependent rect. 7 4
139 184.75 radiation 1.0 270 > th dose independent rect. 6 3
142 184.78 precipitation 0.1 90 < th dose independent rect. 23 8
143 184.78 precipitation 0.1 90 < th dose dependent rect. 23 8
171 185.38 wind 9.0 90 < th dose independent rect. 7 16
172 185.40 wind 1.0 10 > th dose independent rect. 7 5
177 185.45 wind 9.0 90 < th dose dependent rect. 23 8
179 185.51 wind 7.0 270 < th dose independent rect. 5 5
185 185.60 temperature 10.0 270 > th dose independent rect. 5 5
186 185.60 atmosphere 995.0 270 > th dose independent rect. 5 5
187 185.60 atmosphere 1015.0 270 < th dose independent rect. 5 5
203 185.69 temperature 20.0 10 > th dose independent rect. 7 5
204 185.71 precipitation 0.1 270 < th dose independent rect. 5 5
205 185.71 precipitation 0.1 270 < th dose dependent rect. 5 5
208 185.75 wind 9.0 10 < th dose independent rect. 12 19
225 185.91 wind 1.0 270 > th dose independent rect. 7 1
230 185.99 atmosphere 1010.0 90 < th dose independent rect. 17 10
238 186.08 radiation 1.0 270 > th dose independent rect. 7 1
239 186.08 temperature 10.0 10 > th dose independent rect. 7 5
241 186.08 atmosphere 995.0 10 > th dose independent rect. 7 5
242 186.08 atmosphere 1015.0 10 < th dose independent rect. 7 5
243 186.08 temperature 10.0 10 > th dose independent rect. 12 19
255 186.21 precipitation 0.1 10 < th dose independent rect. 7 5
256 186.21 precipitation 0.1 10 < th dose dependent rect. 7 5
264 186.28 temperature 30.0 90 < th dose dependent rect. 23 8
275 186.36 temperature 30.0 270 < th dose independent rect. 5 5
292 186.42 wind 9.0 10 < th dose independent rect. 7 5
306 186.43 temperature 10.0 1440 > th dose independent rect. 24 8
309 186.43 temperature 30.0 1440 < th dose independent rect. 24 8
313 186.43 humidity 50.0 1440 > th dose independent rect. 24 8
318 186.43 atmosphere 995.0 1440 > th dose independent rect. 24 8
336 186.59 wind 9.0 270 < th dose dependent rect. 5 5
344 186.79 precipitation 0.1 10 < th dose independent rect. 7 16
345 186.79 precipitation 0.1 10 < th dose dependent rect. 7 16
363 187.02 wind 1.0 30 > th dose independent rect. 7 16
367 187.09 atmosphere 995.0 90 > th dose independent rect. 11 20
395 187.27 temperature 20.0 30 > th dose independent rect. 7 20
431 187.49 precipitation 0.1 10 < th dose independent rect. 12 19
432 187.49 precipitation 0.1 10 < th dose dependent rect. 12 19
454 187.78 temperature 10.0 270 > th dose dependent rect. 18 15
459 187.82 radiation 1.0 270 < th dose dependent sin 9 NA
461 187.86 temperature 15.0 90 > th dose independent rect. 17 10
469 187.95 precipitation 0.1 270 < th dose independent rect. 21 9
470 187.95 atmosphere 995.0 90 > th dose independent rect. 7 16
472 187.95 precipitation 0.1 270 < th dose dependent rect. 21 9
483 188.08 radiation 10.0 270 < th dose dependent rect. 21 9
486 188.11 radiation 1.0 270 > th dose independent sin 10 NA
488 188.13 radiation 1.0 10 > th dose independent rect. 7 5
501 188.25 atmosphere 995.0 1440 > th dose independent rect. 8 5
503 188.25 temperature 10.0 1440 > th dose independent rect. 13 19
509 188.32 wind 9.0 270 < th dose independent rect. 21 9
511 188.33 radiation 1.0 270 < th dose independent sin 10 NA
512 188.33 temperature 10.0 270 > th dose independent rect. 21 9
513 188.33 temperature 30.0 270 < th dose independent rect. 21 9
514 188.33 humidity 50.0 270 > th dose independent rect. 21 9
517 188.33 atmosphere 995.0 270 > th dose independent rect. 21 9
526 188.39 wind 9.0 90 < th dose dependent rect. 11 20
530 188.48 radiation 40.0 270 < th dose independent rect. 17 17
536 188.53 atmosphere 995.0 10 > th dose independent rect. 12 19
550 188.67 temperature 10.0 10 > th dose dependent rect. 7 4
608 189.06 radiation 10.0 30 > th dose independent sin 8 NA
615 189.13 humidity 60.0 30 > th dose independent rect. 7 16
656 189.39 atmosphere 995.0 270 > th dose independent rect. 9 21
700 189.66 radiation 40.0 90 < th dose independent rect. 7 16
702 189.67 humidity 90.0 90 < th dose independent rect. 7 4
820 190.24 wind 9.0 1440 < th dose independent rect. 24 8
859 190.45 radiation 10.0 30 < th dose independent sin 8 NA
912 190.62 humidity 70.0 270 > th dose independent rect. 17 17
920 190.65 radiation 1.0 270 < th dose dependent rect. 21 17
963 190.83 temperature 10.0 270 > th dose dependent rect. 16 9