Os11g0130300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Nse1 non-SMC component of SMC5-6 complex family protein.
FiT-DB / Search/ Help/ Sample detail
|
Os11g0130300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Nse1 non-SMC component of SMC5-6 complex family protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 122.84 | 0.521 | 6.9 | 1.77 | 3.78 | 2.24 | 0.784 | 2.06 | 0.127 | 18.5 | 21.29 | 124 | -- | -- |
| 125.01 | 0.521 | 6.87 | 1.86 | 3.75 | 1.62 | 0.558 | -- | 0.157 | 18.5 | 21.9 | 84 | -- | -- |
| 123.87 | 0.518 | 6.89 | 1.76 | 3.77 | 2.01 | -- | 1.54 | 0.133 | 18.5 | 21.6 | 93 | -- | -- |
| 125.82 | 0.522 | 6.87 | 1.85 | 3.75 | 1.58 | -- | -- | 0.157 | 18.5 | 22 | 89 | -- | -- |
| 850.83 | 1.37 | 6.8 | 1.64 | -- | 1.25 | -- | 0.431 | 0.0635 | -- | 23 | 2 | -- | -- |
| 149.12 | 0.572 | 6.91 | 1.55 | 3.71 | -- | 0.622 | -- | -0.00888 | 18.7 | -- | -- | -- | -- |
| 150.09 | 0.574 | 6.91 | 1.54 | 3.72 | -- | -- | -- | -0.00691 | 18.7 | -- | -- | -- | -- |
| 851.11 | 1.36 | 6.8 | 1.69 | -- | 1.2 | -- | -- | 0.0718 | -- | 23 | 2 | -- | -- |
| 206.99 | 0.67 | 6.93 | -- | 3.71 | 0.721 | -- | -- | -0.112 | 18.6 | 22.12 | 30 | -- | -- |
| 870.78 | 1.38 | 6.83 | 1.45 | -- | -- | -- | -- | -0.0814 | -- | -- | -- | -- | -- |
| 212.72 | 0.682 | 6.95 | -- | 3.7 | -- | -- | -- | -0.179 | 18.7 | -- | -- | -- | -- |
| 921.17 | 1.42 | 6.85 | -- | -- | 0.622 | -- | -- | -0.181 | -- | 22.7 | 5 | -- | -- |
| 926.57 | 1.42 | 6.87 | -- | -- | -- | -- | -- | -0.243 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 108.17 | temperature | 30 | 270 | < th | dose dependent | rect. | 21 | 8 |
| 2 | 109.28 | temperature | 20 | 270 | > th | dose independent | rect. | 17 | 16 |
| 4 | 111.00 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 8 |
| 11 | 112.23 | temperature | 15 | 270 | > th | dose dependent | rect. | 18 | 15 |
| 16 | 112.92 | temperature | 30 | 10 | < th | dose dependent | rect. | 22 | 10 |
| 38 | 115.08 | temperature | 15 | 30 | > th | dose dependent | sin | 9 | NA |
| 112 | 118.29 | temperature | 30 | 30 | < th | dose dependent | sin | 9 | NA |
| 169 | 119.92 | temperature | 20 | 90 | > th | dose independent | sin | 9 | NA |
| 174 | 119.97 | temperature | 15 | 10 | > th | dose dependent | rect. | 20 | 14 |
| 305 | 122.03 | temperature | 20 | 90 | < th | dose dependent | rect. | 12 | 22 |
| 347 | 122.42 | temperature | 20 | 270 | > th | dose independent | rect. | 3 | 22 |
| 351 | 122.47 | temperature | 20 | 720 | > th | dose independent | rect. | 15 | 9 |
| 386 | 122.77 | atmosphere | 1010 | 270 | < th | dose independent | rect. | 15 | 9 |
| 412 | 122.95 | temperature | 20 | 90 | < th | dose dependent | rect. | 19 | 15 |
| 457 | 123.14 | temperature | 20 | 90 | < th | dose independent | sin | 8 | NA |
| 467 | 123.17 | temperature | 20 | 90 | < th | dose independent | rect. | 23 | 10 |
| 539 | 123.50 | temperature | 15 | 1440 | > th | dose independent | rect. | 7 | 17 |
| 611 | 123.78 | temperature | 20 | 30 | < th | dose independent | rect. | 22 | 21 |
| 687 | 124.09 | temperature | 20 | 30 | > th | dose independent | no | NA | NA |
| 690 | 124.09 | temperature | 20 | 30 | < th | dose independent | rect. | 12 | 20 |
| 761 | 124.28 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 4 |
| 822 | 124.58 | temperature | 25 | 720 | < th | dose dependent | rect. | 18 | 6 |
| 886 | 124.77 | temperature | 25 | 30 | < th | dose dependent | rect. | 23 | 16 |
| 909 | 124.83 | temperature | 20 | 90 | < th | dose independent | rect. | 15 | 18 |
| 976 | 125.01 | temperature | 20 | 720 | > th | dose independent | rect. | 11 | 14 |
| 983 | 125.02 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 6 |