BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0124500 Os12g0124500|Os12g0124500
         (105 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os12g0124500  ZF-HD homeobox protein Cys/His-rich dimerisati...   162   6e-41
Os11g0128300  Similar to ZF-HD homeobox protein (Fragment)        160   3e-40

>Os12g0124500 ZF-HD homeobox protein Cys/His-rich dimerisation region domain
           containing protein
          Length = 105

 Score =  162 bits (409), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 83/105 (79%), Positives = 83/105 (79%)

Query: 1   MGPQQDRSAAKPYANGSTXXXXXXGRKENNKVVRYRECQRNHAASIGGHAVDGCREFMAS 60
           MGPQQDRSAAKPYANGST      GRKENNKVVRYRECQRNHAASIGGHAVDGCREFMAS
Sbjct: 1   MGPQQDRSAAKPYANGSTAAAAAAGRKENNKVVRYRECQRNHAASIGGHAVDGCREFMAS 60

Query: 61  XXXXXXXXXXXXXXXXHQSFHRREVEAAAAECDCSSDTSSGTGRR 105
                           HQSFHRREVEAAAAECDCSSDTSSGTGRR
Sbjct: 61  GADGTAAALLCAACGCHQSFHRREVEAAAAECDCSSDTSSGTGRR 105



>Os11g0128300 Similar to ZF-HD homeobox protein (Fragment)
          Length = 105

 Score =  160 bits (404), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 82/105 (78%), Positives = 83/105 (79%)

Query: 1   MGPQQDRSAAKPYANGSTXXXXXXGRKENNKVVRYRECQRNHAASIGGHAVDGCREFMAS 60
           MGPQQDRSAAKPYANGST      GRKENNKVVRYRECQRNHAASIGGHAVDGCREFMAS
Sbjct: 1   MGPQQDRSAAKPYANGSTAAAAAAGRKENNKVVRYRECQRNHAASIGGHAVDGCREFMAS 60

Query: 61  XXXXXXXXXXXXXXXXHQSFHRREVEAAAAECDCSSDTSSGTGRR 105
                           H+SFHRREVEAAAAECDCSSDTSSGTGRR
Sbjct: 61  GAEGTAAALLCAACGCHRSFHRREVEAAAAECDCSSDTSSGTGRR 105



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.314    0.125    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,938,945
Number of extensions: 71619
Number of successful extensions: 132
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 129
Number of HSP's successfully gapped: 5
Length of query: 105
Length of database: 17,035,801
Length adjustment: 73
Effective length of query: 32
Effective length of database: 13,224,179
Effective search space: 423173728
Effective search space used: 423173728
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 149 (62.0 bits)