BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0124200 Os12g0124200|AK058697
         (149 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os12g0124200  Similar to 40S ribosomal protein S16                297   2e-81
Os11g0127900  Similar to 40S ribosomal protein S16                297   2e-81
AK063008                                                          223   4e-59
AK064645                                                          187   2e-48

>Os12g0124200 Similar to 40S ribosomal protein S16
          Length = 149

 Score =  297 bits (761), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 149/149 (100%), Positives = 149/149 (100%)

Query: 1   MAAALTRPPPGTVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILL 60
           MAAALTRPPPGTVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILL
Sbjct: 1   MAAALTRPPPGTVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILL 60

Query: 61  AGRSRFKDIDMRIRVRGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDR 120
           AGRSRFKDIDMRIRVRGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDR
Sbjct: 61  AGRSRFKDIDMRIRVRGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDR 120

Query: 121 TLLVADPRRCEPKKFGGRGARARFQKSYR 149
           TLLVADPRRCEPKKFGGRGARARFQKSYR
Sbjct: 121 TLLVADPRRCEPKKFGGRGARARFQKSYR 149



>Os11g0127900 Similar to 40S ribosomal protein S16
          Length = 149

 Score =  297 bits (761), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 149/149 (100%), Positives = 149/149 (100%)

Query: 1   MAAALTRPPPGTVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILL 60
           MAAALTRPPPGTVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILL
Sbjct: 1   MAAALTRPPPGTVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILL 60

Query: 61  AGRSRFKDIDMRIRVRGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDR 120
           AGRSRFKDIDMRIRVRGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDR
Sbjct: 61  AGRSRFKDIDMRIRVRGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDR 120

Query: 121 TLLVADPRRCEPKKFGGRGARARFQKSYR 149
           TLLVADPRRCEPKKFGGRGARARFQKSYR
Sbjct: 121 TLLVADPRRCEPKKFGGRGARARFQKSYR 149



>AK063008 
          Length = 144

 Score =  223 bits (568), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 106/141 (75%), Positives = 121/141 (85%)

Query: 9   PPGTVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRFKD 68
           P  +VQ FGRKK A AV+YCK G GLIK+NG PIEL+ PE+LR+K +EP+LL G+ RF +
Sbjct: 4   PIESVQVFGRKKNATAVAYCKRGNGLIKINGTPIELVEPEILRVKTYEPVLLLGQQRFAN 63

Query: 69  IDMRIRVRGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDRTLLVADPR 128
           +D+RIRVRGGG T+QIYAIRQAIAK+LVAYYQKYVDEASKKE+KDI   YDRTLLVADPR
Sbjct: 64  VDIRIRVRGGGHTAQIYAIRQAIAKSLVAYYQKYVDEASKKEIKDILLAYDRTLLVADPR 123

Query: 129 RCEPKKFGGRGARARFQKSYR 149
           RCE KKFGG  ARARFQKSYR
Sbjct: 124 RCEAKKFGGPSARARFQKSYR 144



>AK064645 
          Length = 175

 Score =  187 bits (475), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 89/126 (70%), Positives = 105/126 (83%)

Query: 24  AVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRFKDIDMRIRVRGGGKTSQ 83
           A  +CK G GLIKVNG P+E+I P  L+ K  EP+LL G+ RF  +D+R+RV+GGG  +Q
Sbjct: 50  ATCHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQ 109

Query: 84  IYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDRTLLVADPRRCEPKKFGGRGARAR 143
           IYAIRQ+I+KALVAYYQKYVDEASKKE+KDI  +YDRTLLVADPRRCE KKFGG GARAR
Sbjct: 110 IYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARAR 169

Query: 144 FQKSYR 149
           +QKSYR
Sbjct: 170 YQKSYR 175



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.325    0.140    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,422,259
Number of extensions: 201511
Number of successful extensions: 592
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 592
Number of HSP's successfully gapped: 4
Length of query: 149
Length of database: 17,035,801
Length adjustment: 92
Effective length of query: 57
Effective length of database: 12,232,113
Effective search space: 697230441
Effective search space used: 697230441
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 151 (62.8 bits)