Os11g0127900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 40S ribosomal protein S16.
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Os11g0127900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to 40S ribosomal protein S16.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 72.15 | 0.399 | 14.8 | 1.5 | 0.843 | 1.08 | 0.705 | 0.44 | 0.367 | 20.2 | 20.12 | 1599 | -- | -- |
| 71.02 | 0.392 | 14.8 | 1.31 | 0.832 | 1.02 | 0.743 | -- | 0.33 | 20 | 20.56 | 2853 | -- | -- |
| 73.12 | 0.398 | 14.8 | 1.51 | 0.843 | 1.05 | -- | 0.454 | 0.361 | 20.2 | 20.4 | 1593 | -- | -- |
| 72.63 | 0.397 | 14.8 | 1.27 | 0.868 | 1.01 | -- | -- | 0.312 | 19.9 | 20.6 | 2850 | -- | -- |
| 109.77 | 0.488 | 14.8 | 1.59 | -- | 0.949 | -- | 0.634 | 0.383 | -- | 20.6 | 856 | -- | -- |
| 92.27 | 0.45 | 14.8 | 1.84 | 0.842 | -- | 0.854 | -- | 0.564 | 20.2 | -- | -- | -- | -- |
| 94.51 | 0.455 | 14.8 | 1.82 | 0.842 | -- | -- | -- | 0.565 | 20.2 | -- | -- | -- | -- |
| 109.75 | 0.488 | 14.8 | 1.31 | -- | 1.01 | -- | -- | 0.31 | -- | 20.58 | 2143 | -- | -- |
| 82.34 | 0.423 | 14.9 | -- | 0.836 | 1.62 | -- | -- | -0.00623 | 20.1 | 18.03 | 47520 | -- | -- |
| 133.56 | 0.54 | 14.7 | 1.81 | -- | -- | -- | -- | 0.555 | -- | -- | -- | -- | -- |
| 181.8 | 0.631 | 14.8 | -- | 0.833 | -- | -- | -- | 0.362 | 20.3 | -- | -- | -- | -- |
| 120.57 | 0.511 | 14.9 | -- | -- | 1.63 | -- | -- | -0.0136 | -- | 18.03 | 47024 | -- | -- |
| 220.3 | 0.693 | 14.8 | -- | -- | -- | -- | -- | 0.354 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 68.62 | temperature | 20 | 30 | > th | dose dependent | rect. | 9 | 19 |
| 4 | 68.80 | temperature | 20 | 270 | > th | dose dependent | rect. | 17 | 21 |
| 14 | 69.61 | temperature | 10 | 270 | > th | dose dependent | rect. | 7 | 20 |
| 15 | 69.74 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 4 |
| 16 | 69.74 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 6 |
| 18 | 69.76 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 4 |
| 23 | 69.82 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 8 |
| 77 | 70.40 | temperature | 20 | 4320 | > th | dose independent | rect. | 16 | 9 |
| 83 | 70.45 | temperature | 20 | 4320 | < th | dose independent | rect. | 16 | 8 |
| 168 | 70.92 | temperature | 20 | 1440 | > th | dose independent | sin | 10 | NA |
| 213 | 71.12 | temperature | 20 | 4320 | > th | dose independent | sin | 16 | NA |
| 227 | 71.17 | temperature | 20 | 1440 | < th | dose independent | sin | 10 | NA |
| 245 | 71.23 | temperature | 20 | 4320 | < th | dose independent | sin | 16 | NA |
| 370 | 71.68 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 577 | 72.24 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 707 | 72.53 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 778 | 72.67 | temperature | 20 | 4320 | > th | dose independent | rect. | 6 | 21 |
| 859 | 72.80 | temperature | 20 | 4320 | < th | dose independent | rect. | 6 | 21 |
| 955 | 72.96 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |