BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0127900 Os11g0127900|AK059550
(149 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G09990.1 | chr2:3781442-3781882 FORWARD LENGTH=147 235 8e-63
AT5G18380.1 | chr5:6090253-6090693 REVERSE LENGTH=147 234 1e-62
AT3G04230.1 | chr3:1113169-1113609 REVERSE LENGTH=147 226 4e-60
>AT2G09990.1 | chr2:3781442-3781882 FORWARD LENGTH=147
Length = 146
Score = 235 bits (599), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 111/144 (77%), Positives = 126/144 (87%)
Query: 6 TRPPPGTVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSR 65
T+P +VQCFGRKKTAVAV++CK G GLIK+NG PIEL +PE+LR K FEPILL G+ R
Sbjct: 3 TQPATESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPILLLGKHR 62
Query: 66 FKDIDMRIRVRGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDRTLLVA 125
F ++MRIRV GGG TSQ+YAIRQ+IAKALVAYYQKYVDE SKKE+KDI RYDRTLLVA
Sbjct: 63 FAGVNMRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVA 122
Query: 126 DPRRCEPKKFGGRGARARFQKSYR 149
DPRRCEPKKFGGRGAR+R+QKSYR
Sbjct: 123 DPRRCEPKKFGGRGARSRYQKSYR 146
>AT5G18380.1 | chr5:6090253-6090693 REVERSE LENGTH=147
Length = 146
Score = 234 bits (597), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 110/144 (76%), Positives = 126/144 (87%)
Query: 6 TRPPPGTVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSR 65
T+P +VQCFGRKKTAVAV++CK G GLIK+NG PIEL +PE+LR K FEP+LL G+ R
Sbjct: 3 TQPATESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPVLLLGKHR 62
Query: 66 FKDIDMRIRVRGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDRTLLVA 125
F ++MRIRV GGG TSQ+YAIRQ+IAKALVAYYQKYVDE SKKE+KDI RYDRTLLVA
Sbjct: 63 FAGVNMRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVA 122
Query: 126 DPRRCEPKKFGGRGARARFQKSYR 149
DPRRCEPKKFGGRGAR+R+QKSYR
Sbjct: 123 DPRRCEPKKFGGRGARSRYQKSYR 146
>AT3G04230.1 | chr3:1113169-1113609 REVERSE LENGTH=147
Length = 146
Score = 226 bits (576), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 108/144 (75%), Positives = 122/144 (84%)
Query: 6 TRPPPGTVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSR 65
T+P +VQCFGRKKTA AV+YCK G G+IK+NG PIEL +PE+LR K FEP+LL G+ R
Sbjct: 3 TQPAKESVQCFGRKKTATAVTYCKRGSGMIKLNGSPIELYQPEILRFKIFEPVLLLGKHR 62
Query: 66 FKDIDMRIRVRGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDRTLLVA 125
F +DMRIR GGG TS++YAIRQ+IAKALVAYYQKYVDE SKKE+KDI RYDRTLLVA
Sbjct: 63 FAGVDMRIRATGGGNTSRVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILMRYDRTLLVA 122
Query: 126 DPRRCEPKKFGGRGARARFQKSYR 149
DPRRCE KKFGG GARARFQKSYR
Sbjct: 123 DPRRCESKKFGGPGARARFQKSYR 146
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.325 0.140 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,162,696
Number of extensions: 114200
Number of successful extensions: 314
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 315
Number of HSP's successfully gapped: 3
Length of query: 149
Length of database: 11,106,569
Length adjustment: 89
Effective length of query: 60
Effective length of database: 8,666,545
Effective search space: 519992700
Effective search space used: 519992700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 107 (45.8 bits)