Os12g0124200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 40S ribosomal protein S16.
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Os12g0124200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to 40S ribosomal protein S16.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 56.55 | 0.353 | 14.2 | 1.16 | 0.811 | 0.576 | 0.692 | -0.843 | 0.111 | 19.8 | 20.5 | 2870 | -- | -- |
| 58.05 | 0.355 | 14.2 | 1.25 | 0.77 | 0.739 | 0.775 | -- | 0.0998 | 19.6 | 19.8 | 2770 | -- | -- |
| 57.91 | 0.354 | 14.2 | 1.13 | 0.815 | 0.591 | -- | -0.861 | 0.11 | 19.7 | 20.55 | 2867 | -- | -- |
| 59.01 | 0.358 | 14.2 | 1.24 | 0.825 | 0.775 | -- | -- | 0.138 | 19.7 | 19.8 | 2771 | -- | -- |
| 92.31 | 0.447 | 14.2 | 1.21 | -- | 0.661 | -- | -0.642 | 0.101 | -- | 20.4 | 2226 | -- | -- |
| 68.28 | 0.387 | 14.1 | 1.7 | 0.799 | -- | 0.783 | -- | 0.34 | 19.9 | -- | -- | -- | -- |
| 70.06 | 0.392 | 14.1 | 1.68 | 0.801 | -- | -- | -- | 0.341 | 19.8 | -- | -- | -- | -- |
| 91.68 | 0.446 | 14.1 | 1.43 | -- | 0.661 | -- | -- | 0.182 | -- | 20.51 | 776 | -- | -- |
| 73.43 | 0.399 | 14.2 | -- | 0.772 | 1.22 | -- | -- | 0.0337 | 19.7 | 18.9 | 28677 | -- | -- |
| 104.8 | 0.478 | 14.1 | 1.67 | -- | -- | -- | -- | 0.33 | -- | -- | -- | -- | -- |
| 144.81 | 0.563 | 14.2 | -- | 0.789 | -- | -- | -- | 0.153 | 20 | -- | -- | -- | -- |
| 101.77 | 0.47 | 14.2 | -- | -- | 1.48 | -- | -- | -0.146 | -- | 16.85 | 47520 | -- | -- |
| 178.78 | 0.624 | 14.1 | -- | -- | -- | -- | -- | 0.144 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 56.02 | temperature | 20 | 4320 | < th | dose independent | rect. | 17 | 4 |
| 4 | 56.15 | wind | 1 | 14400 | > th | dose independent | rect. | 24 | 2 |
| 7 | 56.21 | wind | 1 | 14400 | < th | dose independent | rect. | 24 | 2 |
| 13 | 56.37 | temperature | 20 | 4320 | > th | dose independent | rect. | 16 | 6 |
| 14 | 56.44 | temperature | 20 | 4320 | > th | dose independent | rect. | 17 | 4 |
| 15 | 56.44 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 4 |
| 17 | 56.45 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 4 |
| 31 | 56.54 | temperature | 15 | 90 | > th | dose dependent | rect. | 9 | 18 |
| 43 | 56.60 | wind | 3 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 119 | 56.91 | wind | 3 | 4320 | > th | dose independent | rect. | 8 | 1 |
| 180 | 57.06 | temperature | 20 | 4320 | > th | dose independent | sin | 15 | NA |
| 202 | 57.10 | temperature | 20 | 4320 | < th | dose dependent | rect. | 18 | 1 |
| 227 | 57.16 | temperature | 20 | 4320 | < th | dose independent | sin | 15 | NA |
| 238 | 57.18 | wind | 3 | 4320 | < th | dose independent | rect. | 8 | 1 |
| 239 | 57.18 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 2 |
| 252 | 57.20 | temperature | 20 | 1440 | > th | dose independent | sin | 11 | NA |
| 316 | 57.30 | temperature | 20 | 1440 | < th | dose independent | sin | 11 | NA |
| 506 | 57.57 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 19 | 17 |
| 511 | 57.58 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 21 | 15 |
| 515 | 57.59 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 21 | 15 |
| 569 | 57.68 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 23 | 12 |
| 570 | 57.68 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 23 | 12 |
| 573 | 57.68 | wind | 5 | 4320 | < th | dose dependent | rect. | 8 | 1 |
| 624 | 57.75 | temperature | 20 | 4320 | > th | dose independent | rect. | 16 | 20 |
| 627 | 57.76 | wind | 1 | 14400 | > th | dose independent | rect. | 23 | 5 |
| 654 | 57.78 | temperature | 20 | 4320 | < th | dose independent | rect. | 16 | 20 |
| 672 | 57.80 | atmosphere | 995 | 43200 | < th | dose dependent | sin | 10 | NA |
| 722 | 57.85 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 23 | 10 |
| 724 | 57.86 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 3 | 6 |
| 731 | 57.87 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 1 | 9 |
| 753 | 57.89 | wind | 3 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 754 | 57.89 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 1 | 9 |
| 777 | 57.91 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 778 | 57.91 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 2 | 7 |
| 788 | 57.92 | temperature | 20 | 4320 | > th | dose independent | no | NA | NA |
| 802 | 57.93 | atmosphere | 995 | 43200 | < th | dose independent | sin | 7 | NA |
| 834 | 57.96 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 5 | 3 |
| 850 | 57.98 | temperature | 20 | 4320 | < th | dose independent | no | NA | NA |
| 851 | 57.98 | wind | 3 | 43200 | > th | dose independent | rect. | 8 | 2 |
| 859 | 57.98 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 23 |
| 862 | 57.98 | temperature | 20 | 270 | > th | dose dependent | rect. | 7 | 7 |
| 864 | 57.99 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 4 | 4 |
| 870 | 57.99 | temperature | 20 | 4320 | > th | dose independent | rect. | 1 | 23 |
| 921 | 58.04 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 23 |
| 933 | 58.05 | temperature | 20 | 4320 | < th | dose independent | rect. | 1 | 23 |