BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0121000 Os12g0121000|AK068049
         (128 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os12g0121000  Hypothetical protein                                236   2e-63
Os11g0121300  Hypothetical protein                                208   6e-55

>Os12g0121000 Hypothetical protein
          Length = 128

 Score =  236 bits (603), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 116/128 (90%), Positives = 116/128 (90%)

Query: 1   MAKDPHVSISLTGLAMVVLLIFSSSFLQAAQGSDKKMAMKYDVPVKRLVYRPSAMQAAVI 60
           MAKDPHVSISLTGLAMVVLLIFSSSFLQAAQGSDKKMAMKYDVPVKRLVYRPSAMQAAVI
Sbjct: 1   MAKDPHVSISLTGLAMVVLLIFSSSFLQAAQGSDKKMAMKYDVPVKRLVYRPSAMQAAVI 60

Query: 61  GTEAAAYEPFELCMGXXXXXXXXXXXXVDTRCCYAIDCNIPGKPFGVCAFSPHTCDCGAT 120
           GTEAAAYEPFELCMG            VDTRCCYAIDCNIPGKPFGVCAFSPHTCDCGAT
Sbjct: 61  GTEAAAYEPFELCMGCRCCASSNASSCVDTRCCYAIDCNIPGKPFGVCAFSPHTCDCGAT 120

Query: 121 NCTSQQQP 128
           NCTSQQQP
Sbjct: 121 NCTSQQQP 128



>Os11g0121300 Hypothetical protein
          Length = 122

 Score =  208 bits (530), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 104/126 (82%), Positives = 106/126 (84%), Gaps = 5/126 (3%)

Query: 1   MAKDPHVSISLTGLAMVVLLIFSSSFLQAAQGSDKKMAMKYDVPVKRLVYRPSAMQAAVI 60
           MAKDPHVSISLTGLAMVV LIFSSSFLQAAQG DKKM MKYDVPVKRL+YRP+A     I
Sbjct: 1   MAKDPHVSISLTGLAMVVFLIFSSSFLQAAQGPDKKMVMKYDVPVKRLMYRPAA-----I 55

Query: 61  GTEAAAYEPFELCMGXXXXXXXXXXXXVDTRCCYAIDCNIPGKPFGVCAFSPHTCDCGAT 120
           GTEAAAYEPFELCMG            VDTRCCYAIDCNIPGKPFGVCAFSPHTCDCGAT
Sbjct: 56  GTEAAAYEPFELCMGCRCCASSNASSCVDTRCCYAIDCNIPGKPFGVCAFSPHTCDCGAT 115

Query: 121 NCTSQQ 126
           NCTSQQ
Sbjct: 116 NCTSQQ 121



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.324    0.134    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,589,543
Number of extensions: 105582
Number of successful extensions: 275
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 274
Number of HSP's successfully gapped: 2
Length of query: 128
Length of database: 17,035,801
Length adjustment: 89
Effective length of query: 39
Effective length of database: 12,388,755
Effective search space: 483161445
Effective search space used: 483161445
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 150 (62.4 bits)