BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0119800 Os12g0119800|AK059980
         (250 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os12g0119800  Harpin-induced 1 domain containing protein          380   e-106
Os11g0120000  Harpin-induced 1 domain containing protein          334   3e-92
Os06g0521300                                                      200   1e-51
Os05g0312400                                                       96   3e-20

>Os12g0119800 Harpin-induced 1 domain containing protein
          Length = 250

 Score =  380 bits (977), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 197/250 (78%), Positives = 197/250 (78%)

Query: 1   SPFHATHTHPIPYRSRDMXXXXXXXXXXXXXXILPTHTTTAPPFRAHKDADLESXXXXXX 60
           SPFHATHTHPIPYRSRDM              ILPTHTTTAPPFRAHKDADLES      
Sbjct: 1   SPFHATHTHPIPYRSRDMASTTATAAGNGSGSILPTHTTTAPPFRAHKDADLESTTRRRR 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPTTHLVSTRLTGLSPRLSFPATSVQL 120
                                            DPTTHLVSTRLTGLSPRLSFPATSVQL
Sbjct: 61  RRCLCCCLLVTLVVLLVLAITLLVLFLTVLRVRDPTTHLVSTRLTGLSPRLSFPATSVQL 120

Query: 121 NVTLLITVAVHNPNPASFTYATGGHTDLTYRGAHVGDAEIDPGRIPSRGDANVTMALTLQ 180
           NVTLLITVAVHNPNPASFTYATGGHTDLTYRGAHVGDAEIDPGRIPSRGDANVTMALTLQ
Sbjct: 121 NVTLLITVAVHNPNPASFTYATGGHTDLTYRGAHVGDAEIDPGRIPSRGDANVTMALTLQ 180

Query: 181 ADRFAGDLTQLVSDVMGGSVALDASTRIPGRVAILGVFKRHAVAYSDCHFVFGVTEMAVR 240
           ADRFAGDLTQLVSDVMGGSVALDASTRIPGRVAILGVFKRHAVAYSDCHFVFGVTEMAVR
Sbjct: 181 ADRFAGDLTQLVSDVMGGSVALDASTRIPGRVAILGVFKRHAVAYSDCHFVFGVTEMAVR 240

Query: 241 SQQCSDRTKL 250
           SQQCSDRTKL
Sbjct: 241 SQQCSDRTKL 250



>Os11g0120000 Harpin-induced 1 domain containing protein
          Length = 289

 Score =  334 bits (857), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 175/237 (73%), Positives = 177/237 (74%), Gaps = 2/237 (0%)

Query: 16  RDMXXXXXXXXXXXXXXILPTHT--TTAPPFRAHKDADLESXXXXXXXXXXXXXXXXXXX 73
           RDM              ILPTHT   TAPPFR HKDADLES                   
Sbjct: 53  RDMASTTAAAAGNGSGSILPTHTIAATAPPFRTHKDADLESRRRRRRRRCLCCCLLVTLV 112

Query: 74  XXXXXXXXXXXXXXXXXXXXDPTTHLVSTRLTGLSPRLSFPATSVQLNVTLLITVAVHNP 133
                               DPTT LVSTRL GLSPRLSFPA SVQLNVTLLITVAVHNP
Sbjct: 113 VLLVLAITLLVLFLTVLRVRDPTTRLVSTRLIGLSPRLSFPAMSVQLNVTLLITVAVHNP 172

Query: 134 NPASFTYATGGHTDLTYRGAHVGDAEIDPGRIPSRGDANVTMALTLQADRFAGDLTQLVS 193
           NPASFTYATGGHTDLTYRGAHVGDAEIDPGRIPSRGDANVTMALTLQADRFAGDLTQLV+
Sbjct: 173 NPASFTYATGGHTDLTYRGAHVGDAEIDPGRIPSRGDANVTMALTLQADRFAGDLTQLVT 232

Query: 194 DVMGGSVALDASTRIPGRVAILGVFKRHAVAYSDCHFVFGVTEMAVRSQQCSDRTKL 250
           DVMGGSVAL+ASTRIPGRVAILGVFKRHAVAYSDCHFVFGVTEMAVRSQQCSDRTKL
Sbjct: 233 DVMGGSVALEASTRIPGRVAILGVFKRHAVAYSDCHFVFGVTEMAVRSQQCSDRTKL 289



>Os06g0521300 
          Length = 238

 Score =  200 bits (508), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 99/160 (61%), Positives = 120/160 (75%), Gaps = 5/160 (3%)

Query: 94  DPTTHLVSTRLTGLSPRLSFPATSVQLNVTLLITVAVHNPNPASFTYAT--GGHTDLTYR 151
           DP T LVS R+ G+SP L+ P  S Q+NVTLL+TVAVHNPNPASFTY++  GGH DLTYR
Sbjct: 81  DPATRLVSVRVVGVSPNLAPP--SPQINVTLLLTVAVHNPNPASFTYSSDSGGHADLTYR 138

Query: 152 GAHVGDAEIDPGRIPSRGDANVTMALTLQADRFAGD-LTQLVSDVMGGSVALDASTRIPG 210
           GAHVGDA ++ GRIPSRGD  V M +T+ +  F GD + +L+ D+  G+V  DAS RIPG
Sbjct: 139 GAHVGDAVVEAGRIPSRGDGAVQMEMTVLSSSFTGDVMAELIRDIEAGAVPFDASARIPG 198

Query: 211 RVAILGVFKRHAVAYSDCHFVFGVTEMAVRSQQCSDRTKL 250
           +VA+ GV K HAVAYSDCH VFGV EM +RSQ+C D   L
Sbjct: 199 KVAVFGVLKLHAVAYSDCHVVFGVPEMGIRSQECHDHATL 238



>Os05g0312400 
          Length = 213

 Score = 95.5 bits (236), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 52/134 (38%), Positives = 72/134 (53%), Gaps = 2/134 (1%)

Query: 119 QLNVTLLITVAVHNPNPASFTYATGGHTDLTYRGAHVGDAEIDPGRIPSRGDANVTMALT 178
            +N TL   +A+ NP+P +      G  ++ YRGA   DA++ PGR+  RG   + + LT
Sbjct: 80  SVNATLDAVLAIRNPSPVAAFAHDAGRAEVYYRGALAADADVPPGRVAPRGSEALAVRLT 139

Query: 179 LQADRFAGDLTQLVSDVMG--GSVALDASTRIPGRVAILGVFKRHAVAYSDCHFVFGVTE 236
           + ADR AG   +L  DV+G  G V+L   T +PG V +LGVF+RHAV  + C     V  
Sbjct: 140 VLADRLAGRAPELYGDVVGAAGDVSLTVRTTVPGTVTVLGVFRRHAVVITACDVALSVRR 199

Query: 237 MAVRSQQCSDRTKL 250
               S  C   TKL
Sbjct: 200 PGAHSSSCRVLTKL 213



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.133    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,956,043
Number of extensions: 250456
Number of successful extensions: 474
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 475
Number of HSP's successfully gapped: 6
Length of query: 250
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 152
Effective length of database: 11,918,829
Effective search space: 1811662008
Effective search space used: 1811662008
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 155 (64.3 bits)