Os12g0119800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Harpin-induced 1 domain containing protein.
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Os12g0119800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Harpin-induced 1 domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 63.17 | 0.373 | 11.2 | -0.247 | 1.27 | 0.719 | 0.074 | -0.0229 | 0.0314 | 9.39 | 41.93 | 79 | -- | -- |
| 63.17 | 0.37 | 11.2 | -0.247 | 1.27 | 0.72 | 0.0866 | -- | 0.0314 | 9.39 | 42.09 | 79 | -- | -- |
| 63.18 | 0.37 | 11.2 | -0.244 | 1.27 | 0.718 | -- | -0.0496 | 0.0328 | 9.39 | 41.8 | 79 | -- | -- |
| 63.19 | 0.37 | 11.2 | -0.243 | 1.27 | 0.723 | -- | -- | 0.0316 | 9.4 | 42.17 | 79 | -- | -- |
| 77.45 | 0.41 | 11.3 | -0.275 | -- | 1.36 | -- | 0.446 | 0.0662 | -- | 4.703 | 943 | -- | -- |
| 71.12 | 0.395 | 11.3 | -0.272 | 1.01 | -- | 0.229 | -- | -0.0135 | 7.88 | -- | -- | -- | -- |
| 71.28 | 0.395 | 11.3 | -0.266 | 1.01 | -- | -- | -- | -0.0137 | 7.89 | -- | -- | -- | -- |
| 77.09 | 0.409 | 11.3 | -0.175 | -- | 1.39 | -- | -- | 0.0734 | -- | 4.583 | 943 | -- | -- |
| 64.74 | 0.375 | 11.2 | -- | 1.28 | 0.728 | -- | -- | 0.0594 | 9.44 | 40.83 | 79 | -- | -- |
| 127.24 | 0.527 | 11.3 | -0.255 | -- | -- | -- | -- | -5.78e-05 | -- | -- | -- | -- | -- |
| 73.14 | 0.4 | 11.2 | -- | 1.01 | -- | -- | -- | 0.016 | 7.91 | -- | -- | -- | -- |
| 77.87 | 0.411 | 11.3 | -- | -- | 1.4 | -- | -- | 0.092 | -- | 4.22 | 947 | -- | -- |
| 128.95 | 0.53 | 11.3 | -- | -- | -- | -- | -- | 0.0282 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 48.25 | temperature | 15.0 | 30 | > th | dose independent | rect. | 20 | 8 |
| 4 | 49.03 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 20 | 8 |
| 9 | 49.88 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 1 | 8 |
| 12 | 50.19 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 4 | 16 |
| 14 | 50.30 | temperature | 30.0 | 30 | < th | dose independent | rect. | 20 | 8 |
| 15 | 50.30 | humidity | 50.0 | 30 | > th | dose independent | rect. | 20 | 8 |
| 18 | 50.30 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 20 | 8 |
| 19 | 50.30 | radiation | 1.0 | 30 | < th | dose independent | rect. | 20 | 8 |
| 24 | 50.30 | temperature | 10.0 | 30 | > th | dose independent | rect. | 4 | 16 |
| 26 | 50.30 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 4 | 16 |
| 27 | 50.30 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 20 | 8 |
| 32 | 50.32 | wind | 9.0 | 30 | < th | dose independent | rect. | 20 | 8 |
| 34 | 50.39 | wind | 9.0 | 30 | < th | dose independent | rect. | 4 | 16 |
| 55 | 50.50 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 20 | 8 |
| 56 | 50.50 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 20 | 8 |
| 59 | 50.59 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 16 |
| 60 | 50.59 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 16 |
| 83 | 50.76 | radiation | 40.0 | 90 | < th | dose independent | rect. | 4 | 16 |
| 86 | 50.79 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 4 | 16 |
| 87 | 50.79 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 4 | 16 |
| 91 | 50.91 | radiation | 40.0 | 270 | < th | dose independent | rect. | 1 | 8 |
| 94 | 51.12 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 20 | 8 |
| 100 | 51.26 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 7 | 8 |
| 101 | 51.28 | radiation | 20.0 | 90 | < th | dose independent | rect. | 4 | 16 |
| 102 | 51.29 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 1 | 8 |
| 103 | 51.29 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 1 | 8 |
| 106 | 51.36 | temperature | 10.0 | 270 | > th | dose independent | rect. | 7 | 8 |
| 107 | 51.36 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 7 | 8 |
| 108 | 51.36 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 7 | 8 |
| 109 | 51.36 | temperature | 10.0 | 270 | > th | dose independent | rect. | 15 | 16 |
| 110 | 51.36 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 7 | 8 |
| 112 | 51.38 | wind | 9.0 | 270 | < th | dose independent | rect. | 7 | 8 |
| 115 | 51.51 | wind | 9.0 | 270 | < th | dose independent | rect. | 15 | 16 |
| 116 | 51.53 | wind | 7.0 | 270 | < th | dose independent | rect. | 1 | 8 |
| 119 | 51.63 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 21 | 8 |
| 122 | 51.63 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 21 | 8 |
| 126 | 51.63 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 21 | 8 |
| 132 | 51.63 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 21 | 8 |
| 133 | 51.63 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 21 | 8 |
| 145 | 51.63 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 5 | 16 |
| 148 | 51.63 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 9 | 16 |
| 149 | 51.63 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 9 | 16 |
| 150 | 51.67 | radiation | 40.0 | 270 | < th | dose independent | rect. | 15 | 16 |
| 155 | 51.74 | temperature | 10.0 | 270 | > th | dose independent | rect. | 1 | 8 |
| 157 | 51.74 | humidity | 50.0 | 270 | > th | dose independent | rect. | 1 | 8 |
| 158 | 51.74 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 1 | 8 |
| 159 | 51.74 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 1 | 8 |
| 160 | 51.74 | temperature | 10.0 | 270 | > th | dose independent | rect. | 9 | 16 |
| 188 | 51.85 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 15 | 16 |
| 189 | 51.85 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 15 | 16 |
| 217 | 52.01 | temperature | 30.0 | 270 | < th | dose independent | rect. | 1 | 8 |
| 220 | 52.07 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 4 | 16 |
| 223 | 52.10 | wind | 9.0 | 30 | < th | dose dependent | rect. | 20 | 8 |
| 224 | 52.11 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 20 | 8 |
| 227 | 52.19 | wind | 9.0 | 270 | < th | dose independent | rect. | 9 | 16 |
| 233 | 52.27 | temperature | 15.0 | 270 | > th | dose independent | rect. | 20 | 18 |
| 240 | 52.35 | radiation | 40.0 | 270 | < th | dose independent | rect. | 2 | 17 |
| 308 | 52.71 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 2 | 7 |
| 336 | 52.77 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 15 | 4 |
| 339 | 52.78 | temperature | 10.0 | 270 | > th | dose independent | rect. | 14 | 6 |
| 340 | 52.78 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 14 | 6 |
| 342 | 52.78 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 20 | 18 |
| 343 | 52.79 | wind | 9.0 | 270 | < th | dose independent | rect. | 14 | 6 |
| 344 | 52.79 | humidity | 50.0 | 270 | > th | dose independent | rect. | 7 | 8 |
| 359 | 52.84 | radiation | 1.0 | 270 | > th | dose independent | rect. | 7 | 8 |
| 361 | 52.87 | wind | 1.0 | 270 | > th | dose independent | rect. | 7 | 8 |
| 365 | 52.89 | radiation | 40.0 | 270 | < th | dose independent | rect. | 13 | 7 |
| 369 | 52.89 | wind | 9.0 | 270 | < th | dose independent | rect. | 20 | 18 |
| 370 | 52.90 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 9 | 17 |
| 371 | 52.92 | humidity | 50.0 | 270 | > th | dose independent | rect. | 20 | 18 |
| 400 | 53.03 | wind | 1.0 | 270 | > th | dose independent | rect. | 14 | 6 |
| 408 | 53.08 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 20 | 18 |
| 409 | 53.08 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 20 | 18 |
| 414 | 53.12 | wind | 9.0 | 30 | < th | dose dependent | rect. | 4 | 16 |
| 416 | 53.16 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 15 | 16 |
| 424 | 53.18 | temperature | 10.0 | 270 | > th | dose independent | rect. | 13 | 8 |
| 428 | 53.18 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 21 | 16 |
| 433 | 53.21 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 14 | 6 |
| 435 | 53.21 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 14 | 6 |
| 449 | 53.30 | humidity | 50.0 | 30 | > th | dose independent | rect. | 4 | 16 |
| 451 | 53.31 | wind | 9.0 | 270 | < th | dose independent | rect. | 21 | 16 |
| 458 | 53.38 | wind | 9.0 | 270 | < th | dose independent | rect. | 13 | 8 |
| 459 | 53.38 | humidity | 50.0 | 270 | > th | dose independent | rect. | 21 | 16 |
| 463 | 53.41 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 13 | 8 |
| 467 | 53.45 | wind | 1.0 | 270 | > th | dose independent | rect. | 13 | 8 |
| 485 | 53.52 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 19 | 20 |
| 492 | 53.56 | temperature | 15.0 | 30 | > th | dose independent | rect. | 9 | 19 |
| 513 | 53.59 | humidity | 50.0 | 270 | > th | dose independent | rect. | 9 | 17 |
| 519 | 53.61 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 21 | 16 |
| 520 | 53.61 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 21 | 16 |
| 531 | 53.69 | temperature | 10.0 | 270 | > th | dose independent | rect. | 15 | 4 |
| 533 | 53.69 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 15 | 4 |
| 560 | 53.78 | wind | 9.0 | 270 | < th | dose dependent | rect. | 2 | 7 |
| 564 | 53.81 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 13 | 8 |
| 566 | 53.81 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 13 | 8 |
| 584 | 53.87 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 15 | 16 |
| 593 | 53.93 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 15 | 4 |
| 596 | 53.93 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 15 | 4 |
| 603 | 53.94 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 15 | 18 |
| 604 | 53.95 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 2 | 7 |
| 649 | 54.14 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 14 | 6 |
| 654 | 54.16 | wind | 1.0 | 270 | > th | dose independent | rect. | 19 | 8 |
| 698 | 54.19 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 4 | 16 |
| 749 | 54.28 | temperature | 15.0 | 30 | > th | dose independent | rect. | 20 | 21 |
| 751 | 54.28 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 20 | 6 |
| 845 | 54.56 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 4 | 5 |
| 857 | 54.60 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 20 | 20 |
| 860 | 54.61 | wind | 9.0 | 30 | < th | dose dependent | rect. | 4 | 5 |
| 906 | 54.69 | radiation | 40.0 | 90 | < th | dose independent | rect. | 17 | 16 |
| 923 | 54.72 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 20 | 12 |
| 932 | 54.74 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 9 | 19 |
| 935 | 54.74 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 9 | 19 |
| 940 | 54.76 | radiation | 40.0 | 90 | < th | dose independent | rect. | 4 | 5 |
| 949 | 54.78 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 15 | 4 |
| 964 | 54.83 | humidity | 50.0 | 270 | > th | dose independent | rect. | 15 | 16 |
| 972 | 54.85 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 20 | 18 |
| 992 | 54.87 | wind | 1.0 | 270 | > th | dose independent | rect. | 9 | 16 |