BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0119800 Os12g0119800|AK059980
(250 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G05975.1 | chr3:1792145-1792714 REVERSE LENGTH=190 101 3e-22
AT3G54200.1 | chr3:20065731-20066438 FORWARD LENGTH=236 75 2e-14
AT2G46150.1 | chr2:18961424-18962089 FORWARD LENGTH=222 71 5e-13
AT3G44380.1 | chr3:16036254-16036814 REVERSE LENGTH=187 58 4e-09
AT4G23610.1 | chr4:12314037-12314723 FORWARD LENGTH=229 50 2e-06
>AT3G05975.1 | chr3:1792145-1792714 REVERSE LENGTH=190
Length = 189
Score = 101 bits (252), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 84/156 (53%), Gaps = 2/156 (1%)
Query: 95 PTTHLVSTRLTGLSPRLSFPATSVQLNVTLLITVAVHNPNPASFTYATGGHTDLTYRGAH 154
P VS+ + G+S +S P VQLN TL + + + NPN A F Y T + + YR
Sbjct: 36 PILQTVSSTVDGISTNISLPY-EVQLNFTLTLEMLLKNPNVADFEYKTVENL-VYYRDTL 93
Query: 155 VGDAEIDPGRIPSRGDANVTMALTLQADRFAGDLTQLVSDVMGGSVALDASTRIPGRVAI 214
VG+ + +P++G + L LQ D+F +L +V DV+ G + ++ ++PG++ +
Sbjct: 94 VGNLTLPSSTLPAKGSVLLPCPLFLQLDKFVANLGDIVQDVLHGKIVMETRAKMPGKITL 153
Query: 215 LGVFKRHAVAYSDCHFVFGVTEMAVRSQQCSDRTKL 250
LG+FK + S C+ V G M V Q C +TKL
Sbjct: 154 LGIFKIPLDSISHCNLVLGFPSMVVEDQVCDLKTKL 189
>AT3G54200.1 | chr3:20065731-20066438 FORWARD LENGTH=236
Length = 235
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 68/125 (54%), Gaps = 2/125 (1%)
Query: 126 ITVAVHNPNPASFTYATGGHTDLTYRGAHVGDAEIDPGRIPSRGDANVTMALTLQADRFA 185
+ +++ NPN F+Y + L YRG +G+A + RI +R + + LTL ADR
Sbjct: 113 VDLSLKNPNRIGFSYDSSSAL-LNYRGQVIGEAPLPANRIAARKTVPLNITLTLMADRLL 171
Query: 186 GDLTQLVSDVMGGSVALDASTRIPGRVAILGVFKRHAVAYSDCHFVFGVTEMAVRSQQCS 245
+ TQL+SDVM G + L+ ++ G+V +L +FK + S C V++ V SQ C
Sbjct: 172 SE-TQLLSDVMAGVIPLNTFVKVTGKVTVLKIFKIKVQSSSSCDLSISVSDRNVTSQHCK 230
Query: 246 DRTKL 250
TKL
Sbjct: 231 YSTKL 235
>AT2G46150.1 | chr2:18961424-18962089 FORWARD LENGTH=222
Length = 221
Score = 71.2 bits (173), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 81/163 (49%), Gaps = 12/163 (7%)
Query: 94 DPTTHLVSTRLTGLSPRLSFPATS-VQL---NVTLLITVAVHNPNPASFTYATGGHTDLT 149
DP + + GL S T+ VQL N+++++ V+V NPN ASF Y+ TD+
Sbjct: 65 DPIIKMNGVMVNGLD---SVTGTNQVQLLGTNISMIVDVSVKNPNTASFKYS-NTTTDIY 120
Query: 150 YRGAHVGDAEIDPGRIPSRGDANVTMALTLQADRFAGD--LTQLVSDVMGGSVALDASTR 207
Y+G VG+A PG+ + + + + + DR D L + +S G V + + TR
Sbjct: 121 YKGTLVGEAHGLPGKARPHRTSRMNVTVDIMLDRILSDPGLGREISR--SGLVNVWSYTR 178
Query: 208 IPGRVAILGVFKRHAVAYSDCHFVFGVTEMAVRSQQCSDRTKL 250
+ G+V I+G+ K+H +C +T A++ C + L
Sbjct: 179 VGGKVKIMGIVKKHVTVKMNCTMAVNITGQAIQDVDCKKKIDL 221
>AT3G44380.1 | chr3:16036254-16036814 REVERSE LENGTH=187
Length = 186
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 66/142 (46%), Gaps = 10/142 (7%)
Query: 94 DPTTHLVSTRLTGLSPRLSFPATSVQLNVTLLITVAVHNPNPASFTYATGGHTDLTYRGA 153
DPT HL+S LT L +L+ P L+ L++TV V NPN A+ Y++ T L Y G
Sbjct: 35 DPTFHLISIDLTSL--KLNLPV----LDAELMLTVHVTNPNIAAIHYSSTKMTIL-YDGT 87
Query: 154 HVGDAEIDPGRIPSRGDANVTMALTLQADRFAGDLTQLVSDVMGGSVALDASTRIPGRVA 213
+G AE+ G P+R + + L A Q SDV + L+A I G
Sbjct: 88 VLGSAEVKAGSQPARSCQLLRLPARLDGMELAQHARQFFSDVANREMKLEAKLTIEGAAK 147
Query: 214 ILGV---FKRHAVAYSDCHFVF 232
+L F+ H ++ VF
Sbjct: 148 VLWWDHSFRVHVDSFVTVDPVF 169
>AT4G23610.1 | chr4:12314037-12314723 FORWARD LENGTH=229
Length = 228
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 54/128 (42%), Gaps = 8/128 (6%)
Query: 121 NVTLLITVAVHNPNPASFTYATGG----HTDLTYRGAHVGDAEIDPGRIPSRGDANVTMA 176
N T+ + +++HNPNPA F H +L G + +E IP++ + +
Sbjct: 104 NTTVSVEISLHNPNPALFIVKNVNVSFYHGELVVVGESIRRSET----IPAKRTVKMNLT 159
Query: 177 LTLQADRFAGDLTQLVSDVMGGSVALDASTRIPGRVAILGVFKRHAVAYSDCHFVFGVTE 236
+ + L L+ D+ G V L +S + GRV + +F++ +DC
Sbjct: 160 AEIVKTKLLASLPGLMEDLNGRGVDLKSSVEVRGRVKKMKIFRKTVHLQTDCFMKMTTNN 219
Query: 237 MAVRSQQC 244
+ QC
Sbjct: 220 FLTPTFQC 227
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.133 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,082,023
Number of extensions: 135030
Number of successful extensions: 224
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 218
Number of HSP's successfully gapped: 5
Length of query: 250
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 154
Effective length of database: 8,474,633
Effective search space: 1305093482
Effective search space used: 1305093482
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 110 (47.0 bits)