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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0120000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Harpin-induced 1 domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.7 (0.0266) R2 : 0.486
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.93 (0.0678) R2dC : 0.211 R2C : 0.197
β3 : 1.42 (0.102) R2dE : 0.237 R2E : 0.264
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.192 (0.0578) R2dN8 : 0.0176 R2N8 : 0.0444
σ : 0.493
deviance : 112
__
_____
C
peak time of C : 7.44
E
wheather : temperature
threshold : 19
memory length : 7229
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
108.83 0.49 4.75 0.0328 0.921 1.88 0.297 1.4 -0.183 7.57 19 6031 -- --
111.52 0.492 4.69 0.209 0.932 1.58 0.396 -- -0.137 7.47 18.9 7305 -- --
109.06 0.486 4.75 0.0412 0.923 1.89 -- 1.39 -0.183 7.52 18.99 6021 -- --
111.6 0.492 4.7 0.167 0.923 1.53 -- -- -0.158 7.45 18.96 7260 -- --
153.56 0.577 4.77 0.083 -- 1.99 -- 1.56 -0.161 -- 18.96 6381 -- --
140.33 0.555 4.78 -0.837 0.917 -- 0.373 -- -0.524 7.62 -- -- -- --
140.7 0.555 4.78 -0.829 0.919 -- -- -- -0.525 7.55 -- -- -- --
155.54 0.581 4.71 0.177 -- 1.53 -- -- -0.122 -- 18.9 6326 -- --
112 0.493 4.7 -- 0.93 1.42 -- -- -0.192 7.44 19 7229 -- --
185.96 0.637 4.8 -0.815 -- -- -- -- -0.511 -- -- -- -- --
158.81 0.589 4.76 -- 0.912 -- -- -- -0.433 7.61 -- -- -- --
155.79 0.581 4.73 -- -- 1.39 -- -- -0.18 -- 18.9 6222 -- --
203.5 0.666 4.78 -- -- -- -- -- -0.42 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 97.29 temperature 30 90 < th dose dependent rect. 16 17
17 100.79 temperature 15 90 > th dose dependent rect. 9 19
24 101.60 temperature 15 270 > th dose dependent rect. 19 9
33 102.51 temperature 10 270 > th dose dependent rect. 6 21
58 103.92 temperature 10 270 > th dose dependent rect. 9 16
91 105.09 temperature 10 270 > th dose dependent rect. 17 22
164 107.71 radiation 20 14400 < th dose independent rect. 21 9
254 109.37 humidity 60 43200 < th dose dependent rect. 8 2
290 109.96 temperature 20 90 > th dose independent rect. 9 19
291 109.96 humidity 60 43200 < th dose dependent rect. 2 11
292 109.96 humidity 60 43200 < th dose dependent rect. 24 13
294 109.97 humidity 60 43200 < th dose dependent rect. 6 7
299 109.99 humidity 50 43200 < th dose dependent sin 9 NA
332 110.12 humidity 60 43200 < th dose dependent sin 7 NA
335 110.14 atmosphere 1015 14400 < th dose independent rect. 18 8
344 110.16 atmosphere 1015 14400 < th dose independent rect. 19 6
354 110.18 humidity 60 43200 < th dose independent rect. 8 2
355 110.18 atmosphere 1015 14400 > th dose independent rect. 19 6
356 110.18 atmosphere 1015 14400 > th dose independent rect. 18 8
379 110.23 atmosphere 1015 14400 < th dose independent sin 13 NA
393 110.27 atmosphere 1015 14400 > th dose independent sin 13 NA
429 110.33 atmosphere 1015 14400 > th dose independent rect. 20 2
444 110.35 atmosphere 1015 14400 < th dose independent rect. 19 20
486 110.40 atmosphere 1015 14400 > th dose independent rect. 18 20
498 110.41 atmosphere 1015 14400 < th dose independent rect. 20 1
620 110.52 atmosphere 1015 14400 > th dose dependent rect. 22 9
621 110.52 atmosphere 1015 14400 > th dose dependent rect. 21 11
633 110.54 atmosphere 1015 14400 < th dose independent no NA NA
653 110.56 atmosphere 1015 14400 < th dose independent rect. 4 23
656 110.57 atmosphere 1015 14400 > th dose independent no NA NA
663 110.57 atmosphere 1015 14400 < th dose independent rect. 6 23
669 110.58 humidity 60 43200 < th dose independent rect. 6 4
673 110.58 atmosphere 1015 14400 < th dose independent rect. 1 23
697 110.60 humidity 60 43200 < th dose dependent rect. 11 1
705 110.61 atmosphere 1015 14400 > th dose independent rect. 1 23
717 110.61 atmosphere 1015 14400 > th dose dependent sin 8 NA
735 110.63 atmosphere 1015 14400 > th dose dependent rect. 23 6
773 110.66 atmosphere 1015 14400 > th dose dependent rect. 9 2
775 110.67 atmosphere 1015 14400 < th dose independent rect. 9 4
798 110.69 atmosphere 1015 14400 < th dose independent sin 4 NA
799 110.69 atmosphere 1015 14400 > th dose independent rect. 8 5
801 110.69 atmosphere 1015 14400 < th dose independent rect. 3 12
811 110.69 temperature 30 10 < th dose dependent rect. 12 21
813 110.70 atmosphere 1015 14400 > th dose independent rect. 11 1
814 110.70 atmosphere 1015 14400 > th dose independent rect. 6 8
820 110.70 atmosphere 1015 14400 > th dose dependent rect. 8 4
822 110.70 atmosphere 1015 14400 > th dose dependent rect. 6 7
831 110.71 atmosphere 1015 14400 > th dose independent sin 3 NA
834 110.71 humidity 70 43200 > th dose independent rect. 2 7
841 110.71 atmosphere 1015 14400 > th dose dependent rect. 4 10
849 110.72 atmosphere 1015 14400 < th dose independent rect. 6 8
852 110.72 atmosphere 1015 14400 > th dose independent rect. 3 12
856 110.73 humidity 60 43200 > th dose independent rect. 8 2
873 110.73 atmosphere 1015 14400 > th dose dependent rect. 1 13
897 110.75 humidity 70 43200 > th dose independent rect. 4 5
998 110.84 atmosphere 1015 14400 < th dose independent rect. 3 1