BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0120000 Os11g0120000|AK060359
(289 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G05975.1 | chr3:1792145-1792714 REVERSE LENGTH=190 102 3e-22
AT3G54200.1 | chr3:20065731-20066438 FORWARD LENGTH=236 74 1e-13
AT2G46150.1 | chr2:18961424-18962089 FORWARD LENGTH=222 70 1e-12
AT3G44380.1 | chr3:16036254-16036814 REVERSE LENGTH=187 54 1e-07
AT4G23610.1 | chr4:12314037-12314723 FORWARD LENGTH=229 49 2e-06
>AT3G05975.1 | chr3:1792145-1792714 REVERSE LENGTH=190
Length = 189
Score = 102 bits (253), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 85/156 (54%), Gaps = 2/156 (1%)
Query: 134 PTTRLVSTRLIGLSPRLSFPAMSVQLNVTLLITVAVHNPNPASFTYATGGHTDLTYRGAH 193
P + VS+ + G+S +S P VQLN TL + + + NPN A F Y T + + YR
Sbjct: 36 PILQTVSSTVDGISTNISLPY-EVQLNFTLTLEMLLKNPNVADFEYKTVENL-VYYRDTL 93
Query: 194 VGDAEIDPGRIPSRGDANVTMALTLQADRFAGDLTQLVTDVMGGSVALEASTRIPGRVAI 253
VG+ + +P++G + L LQ D+F +L +V DV+ G + +E ++PG++ +
Sbjct: 94 VGNLTLPSSTLPAKGSVLLPCPLFLQLDKFVANLGDIVQDVLHGKIVMETRAKMPGKITL 153
Query: 254 LGVFKRHAVAYSDCHFVFGVTEMAVRSQQCSDRTKL 289
LG+FK + S C+ V G M V Q C +TKL
Sbjct: 154 LGIFKIPLDSISHCNLVLGFPSMVVEDQVCDLKTKL 189
>AT3G54200.1 | chr3:20065731-20066438 FORWARD LENGTH=236
Length = 235
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 67/125 (53%), Gaps = 2/125 (1%)
Query: 165 ITVAVHNPNPASFTYATGGHTDLTYRGAHVGDAEIDPGRIPSRGDANVTMALTLQADRFA 224
+ +++ NPN F+Y + L YRG +G+A + RI +R + + LTL ADR
Sbjct: 113 VDLSLKNPNRIGFSYDSSSAL-LNYRGQVIGEAPLPANRIAARKTVPLNITLTLMADRLL 171
Query: 225 GDLTQLVTDVMGGSVALEASTRIPGRVAILGVFKRHAVAYSDCHFVFGVTEMAVRSQQCS 284
+ TQL++DVM G + L ++ G+V +L +FK + S C V++ V SQ C
Sbjct: 172 SE-TQLLSDVMAGVIPLNTFVKVTGKVTVLKIFKIKVQSSSSCDLSISVSDRNVTSQHCK 230
Query: 285 DRTKL 289
TKL
Sbjct: 231 YSTKL 235
>AT2G46150.1 | chr2:18961424-18962089 FORWARD LENGTH=222
Length = 221
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 72/138 (52%), Gaps = 8/138 (5%)
Query: 157 VQL---NVTLLITVAVHNPNPASFTYATGGHTDLTYRGAHVGDAEIDPGRIPSRGDANVT 213
VQL N+++++ V+V NPN ASF Y+ TD+ Y+G VG+A PG+ + +
Sbjct: 87 VQLLGTNISMIVDVSVKNPNTASFKYS-NTTTDIYYKGTLVGEAHGLPGKARPHRTSRMN 145
Query: 214 MALTLQADRFAGD--LTQLVTDVMGGSVALEASTRIPGRVAILGVFKRHAVAYSDCHFVF 271
+ + + DR D L + ++ G V + + TR+ G+V I+G+ K+H +C
Sbjct: 146 VTVDIMLDRILSDPGLGREISR--SGLVNVWSYTRVGGKVKIMGIVKKHVTVKMNCTMAV 203
Query: 272 GVTEMAVRSQQCSDRTKL 289
+T A++ C + L
Sbjct: 204 NITGQAIQDVDCKKKIDL 221
>AT3G44380.1 | chr3:16036254-16036814 REVERSE LENGTH=187
Length = 186
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 64/142 (45%), Gaps = 10/142 (7%)
Query: 133 DPTTRLVSTRLIGLSPRLSFPAMSVQLNVTLLITVAVHNPNPASFTYATGGHTDLTYRGA 192
DPT L+S L L +L+ P L+ L++TV V NPN A+ Y++ T L Y G
Sbjct: 35 DPTFHLISIDLTSL--KLNLPV----LDAELMLTVHVTNPNIAAIHYSSTKMTIL-YDGT 87
Query: 193 HVGDAEIDPGRIPSRGDANVTMALTLQADRFAGDLTQLVTDVMGGSVALEASTRIPGRVA 252
+G AE+ G P+R + + L A Q +DV + LEA I G
Sbjct: 88 VLGSAEVKAGSQPARSCQLLRLPARLDGMELAQHARQFFSDVANREMKLEAKLTIEGAAK 147
Query: 253 ILGV---FKRHAVAYSDCHFVF 271
+L F+ H ++ VF
Sbjct: 148 VLWWDHSFRVHVDSFVTVDPVF 169
>AT4G23610.1 | chr4:12314037-12314723 FORWARD LENGTH=229
Length = 228
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 61/146 (41%), Gaps = 10/146 (6%)
Query: 144 IGLSPRLSFP--AMSVQLNVTLLITVAVHNPNPASFTYATGG----HTDLTYRGAHVGDA 197
I + R F ++ N T+ + +++HNPNPA F H +L G + +
Sbjct: 86 ISFNQRFDFVNGKVNTNQNTTVSVEISLHNPNPALFIVKNVNVSFYHGELVVVGESIRRS 145
Query: 198 EIDPGRIPSRGDANVTMALTLQADRFAGDLTQLVTDVMGGSVALEASTRIPGRVAILGVF 257
E IP++ + + + + L L+ D+ G V L++S + GRV + +F
Sbjct: 146 ET----IPAKRTVKMNLTAEIVKTKLLASLPGLMEDLNGRGVDLKSSVEVRGRVKKMKIF 201
Query: 258 KRHAVAYSDCHFVFGVTEMAVRSQQC 283
++ +DC + QC
Sbjct: 202 RKTVHLQTDCFMKMTTNNFLTPTFQC 227
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.130 0.373
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,334,935
Number of extensions: 137377
Number of successful extensions: 238
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 233
Number of HSP's successfully gapped: 5
Length of query: 289
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 191
Effective length of database: 8,419,801
Effective search space: 1608181991
Effective search space used: 1608181991
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 111 (47.4 bits)