BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0120000 Os11g0120000|AK060359
(289 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0120000 Harpin-induced 1 domain containing protein 439 e-123
Os12g0119800 Harpin-induced 1 domain containing protein 334 4e-92
Os06g0521300 204 4e-53
Os05g0312400 96 4e-20
>Os11g0120000 Harpin-induced 1 domain containing protein
Length = 289
Score = 439 bits (1128), Expect = e-123, Method: Compositional matrix adjust.
Identities = 228/289 (78%), Positives = 228/289 (78%)
Query: 1 AILSSLTSSAGRDTXXXXXXXXPTAHYLNPIQSNQITSLSSTPRTRTQSSIDRDMXXXXX 60
AILSSLTSSAGRDT PTAHYLNPIQSNQITSLSSTPRTRTQSSIDRDM
Sbjct: 1 AILSSLTSSAGRDTREREREREPTAHYLNPIQSNQITSLSSTPRTRTQSSIDRDMASTTA 60
Query: 61 XXXXXXXXXILPTHTIAATAPPFRTHKDADLESXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
ILPTHTIAATAPPFRTHKDADLES
Sbjct: 61 AAAGNGSGSILPTHTIAATAPPFRTHKDADLESRRRRRRRRCLCCCLLVTLVVLLVLAIT 120
Query: 121 XXXXXXXXXXXXDPTTRLVSTRLIGLSPRLSFPAMSVQLNVTLLITVAVHNPNPASFTYA 180
DPTTRLVSTRLIGLSPRLSFPAMSVQLNVTLLITVAVHNPNPASFTYA
Sbjct: 121 LLVLFLTVLRVRDPTTRLVSTRLIGLSPRLSFPAMSVQLNVTLLITVAVHNPNPASFTYA 180
Query: 181 TGGHTDLTYRGAHVGDAEIDPGRIPSRGDANVTMALTLQADRFAGDLTQLVTDVMGGSVA 240
TGGHTDLTYRGAHVGDAEIDPGRIPSRGDANVTMALTLQADRFAGDLTQLVTDVMGGSVA
Sbjct: 181 TGGHTDLTYRGAHVGDAEIDPGRIPSRGDANVTMALTLQADRFAGDLTQLVTDVMGGSVA 240
Query: 241 LEASTRIPGRVAILGVFKRHAVAYSDCHFVFGVTEMAVRSQQCSDRTKL 289
LEASTRIPGRVAILGVFKRHAVAYSDCHFVFGVTEMAVRSQQCSDRTKL
Sbjct: 241 LEASTRIPGRVAILGVFKRHAVAYSDCHFVFGVTEMAVRSQQCSDRTKL 289
>Os12g0119800 Harpin-induced 1 domain containing protein
Length = 250
Score = 334 bits (857), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 175/237 (73%), Positives = 177/237 (74%), Gaps = 2/237 (0%)
Query: 53 RDMXXXXXXXXXXXXXXILPTHTIAATAPPFRTHKDADLESXXXXXXXXXXXXXXXXXXX 112
RDM ILPTHT TAPPFR HKDADLES
Sbjct: 16 RDMASTTATAAGNGSGSILPTHTT--TAPPFRAHKDADLESTTRRRRRRCLCCCLLVTLV 73
Query: 113 XXXXXXXXXXXXXXXXXXXXDPTTRLVSTRLIGLSPRLSFPAMSVQLNVTLLITVAVHNP 172
DPTT LVSTRL GLSPRLSFPA SVQLNVTLLITVAVHNP
Sbjct: 74 VLLVLAITLLVLFLTVLRVRDPTTHLVSTRLTGLSPRLSFPATSVQLNVTLLITVAVHNP 133
Query: 173 NPASFTYATGGHTDLTYRGAHVGDAEIDPGRIPSRGDANVTMALTLQADRFAGDLTQLVT 232
NPASFTYATGGHTDLTYRGAHVGDAEIDPGRIPSRGDANVTMALTLQADRFAGDLTQLV+
Sbjct: 134 NPASFTYATGGHTDLTYRGAHVGDAEIDPGRIPSRGDANVTMALTLQADRFAGDLTQLVS 193
Query: 233 DVMGGSVALEASTRIPGRVAILGVFKRHAVAYSDCHFVFGVTEMAVRSQQCSDRTKL 289
DVMGGSVAL+ASTRIPGRVAILGVFKRHAVAYSDCHFVFGVTEMAVRSQQCSDRTKL
Sbjct: 194 DVMGGSVALDASTRIPGRVAILGVFKRHAVAYSDCHFVFGVTEMAVRSQQCSDRTKL 250
>Os06g0521300
Length = 238
Score = 204 bits (520), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 99/160 (61%), Positives = 122/160 (76%), Gaps = 5/160 (3%)
Query: 133 DPTTRLVSTRLIGLSPRLSFPAMSVQLNVTLLITVAVHNPNPASFTYAT--GGHTDLTYR 190
DP TRLVS R++G+SP L+ P S Q+NVTLL+TVAVHNPNPASFTY++ GGH DLTYR
Sbjct: 81 DPATRLVSVRVVGVSPNLAPP--SPQINVTLLLTVAVHNPNPASFTYSSDSGGHADLTYR 138
Query: 191 GAHVGDAEIDPGRIPSRGDANVTMALTLQADRFAGD-LTQLVTDVMGGSVALEASTRIPG 249
GAHVGDA ++ GRIPSRGD V M +T+ + F GD + +L+ D+ G+V +AS RIPG
Sbjct: 139 GAHVGDAVVEAGRIPSRGDGAVQMEMTVLSSSFTGDVMAELIRDIEAGAVPFDASARIPG 198
Query: 250 RVAILGVFKRHAVAYSDCHFVFGVTEMAVRSQQCSDRTKL 289
+VA+ GV K HAVAYSDCH VFGV EM +RSQ+C D L
Sbjct: 199 KVAVFGVLKLHAVAYSDCHVVFGVPEMGIRSQECHDHATL 238
>Os05g0312400
Length = 213
Score = 95.5 bits (236), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 52/134 (38%), Positives = 72/134 (53%), Gaps = 2/134 (1%)
Query: 158 QLNVTLLITVAVHNPNPASFTYATGGHTDLTYRGAHVGDAEIDPGRIPSRGDANVTMALT 217
+N TL +A+ NP+P + G ++ YRGA DA++ PGR+ RG + + LT
Sbjct: 80 SVNATLDAVLAIRNPSPVAAFAHDAGRAEVYYRGALAADADVPPGRVAPRGSEALAVRLT 139
Query: 218 LQADRFAGDLTQLVTDVMG--GSVALEASTRIPGRVAILGVFKRHAVAYSDCHFVFGVTE 275
+ ADR AG +L DV+G G V+L T +PG V +LGVF+RHAV + C V
Sbjct: 140 VLADRLAGRAPELYGDVVGAAGDVSLTVRTTVPGTVTVLGVFRRHAVVITACDVALSVRR 199
Query: 276 MAVRSQQCSDRTKL 289
S C TKL
Sbjct: 200 PGAHSSSCRVLTKL 213
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.130 0.373
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,312,138
Number of extensions: 250473
Number of successful extensions: 445
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 446
Number of HSP's successfully gapped: 6
Length of query: 289
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 189
Effective length of database: 11,814,401
Effective search space: 2232921789
Effective search space used: 2232921789
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 155 (64.3 bits)