BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0112300 Os12g0112300|AK068723
(499 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0112300 Conserved hypothetical protein 879 0.0
Os11g0112900 Hypothetical protein 90 4e-18
>Os12g0112300 Conserved hypothetical protein
Length = 499
Score = 879 bits (2272), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 455/492 (92%), Positives = 455/492 (92%)
Query: 8 RHRLRDAAVASVVAVLPHEISPLISAASTFFFILSAYFAVLPLRDEGAISLGLSSLPGLF 67
RHRLRDAAVASVVAVLPHEISPLISAASTFFFILSAYFAVLPLRDEGAISLGLSSLPGLF
Sbjct: 8 RHRLRDAAVASVVAVLPHEISPLISAASTFFFILSAYFAVLPLRDEGAISLGLSSLPGLF 67
Query: 68 AGSLLLTLVAAPVASLAFSLPSIPKPRALVFIHRXXXXXXXXXXXXWFASTPGHSPSISQ 127
AGSLLLTLVAAPVASLAFSLPSIPKPRALVFIHR WFASTPGHSPSISQ
Sbjct: 68 AGSLLLTLVAAPVASLAFSLPSIPKPRALVFIHRFFSLSLLVFFVLWFASTPGHSPSISQ 127
Query: 128 SSEDASNKPPGWGNHSWFYILVRISLFLWVSLLNLIAISSTWARVIDIMDSESGSRLFGF 187
SSEDASNKPPGWGNHSWFYILVRISLFLWVSLLNLIAISSTWARVIDIMDSESGSRLFGF
Sbjct: 128 SSEDASNKPPGWGNHSWFYILVRISLFLWVSLLNLIAISSTWARVIDIMDSESGSRLFGF 187
Query: 188 IGAGATLGQLFGSLFAXXXXXXXXXXXXXXXXXXXXXXXXXKGICTDDTHGSMELSSTIA 247
IGAGATLGQLFGSLFA KGICTDDTHGSMELSSTIA
Sbjct: 188 IGAGATLGQLFGSLFAATMALLGPFLLLFSSLLMELAALSSKGICTDDTHGSMELSSTIA 247
Query: 248 EQSQNTEADDEMSSLVTSQGLPSQVSESQKTKPEIFVMFEGFWLIARSPYLMYISLFLWL 307
EQSQNTEADDEMSSLVTSQGLPSQVSESQKTKPEIFVMFEGFWLIARSPYLMYISLFLWL
Sbjct: 248 EQSQNTEADDEMSSLVTSQGLPSQVSESQKTKPEIFVMFEGFWLIARSPYLMYISLFLWL 307
Query: 308 SAVVSSFFYFQKVTIVATTISSPTARRRTFALINSFIAVFILAGQLTLTGRILTIAGVTV 367
SAVVSSFFYFQKVTIVATTISSPTARRRTFALINSFIAVFILAGQLTLTGRILTIAGVTV
Sbjct: 308 SAVVSSFFYFQKVTIVATTISSPTARRRTFALINSFIAVFILAGQLTLTGRILTIAGVTV 367
Query: 368 AICASPFIATLNMVALALWPTWVAVAVTETIRKVTTYVLTRPGRELLFTVVSQDEKYKAK 427
AICASPFIATLNMVALALWPTWVAVAVTETIRKVTTYVLTRPGRELLFTVVSQDEKYKAK
Sbjct: 368 AICASPFIATLNMVALALWPTWVAVAVTETIRKVTTYVLTRPGRELLFTVVSQDEKYKAK 427
Query: 428 VCIDVVVQRLGDATAAGIYSLLFSSLEKKASMVTLYALPLCFVWLLTAFHLGRLQTNLVK 487
VCIDVVVQRLGDATAAGIYSLLFSSLEKKASMVTLYALPLCFVWLLTAFHLGRLQTNLVK
Sbjct: 428 VCIDVVVQRLGDATAAGIYSLLFSSLEKKASMVTLYALPLCFVWLLTAFHLGRLQTNLVK 487
Query: 488 VQVASFASSIPR 499
VQVASFASSIPR
Sbjct: 488 VQVASFASSIPR 499
>Os11g0112900 Hypothetical protein
Length = 70
Score = 89.7 bits (221), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 44/45 (97%), Positives = 45/45 (100%)
Query: 357 GRILTIAGVTVAICASPFIATLNMVALALWPTWVAVAVTETIRKV 401
GRILT+AGVTVAICASPFIATLNMVALALWPTWVAVAVTETIRKV
Sbjct: 7 GRILTVAGVTVAICASPFIATLNMVALALWPTWVAVAVTETIRKV 51
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.324 0.135 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,537,696
Number of extensions: 472079
Number of successful extensions: 1717
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1710
Number of HSP's successfully gapped: 2
Length of query: 499
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 394
Effective length of database: 11,553,331
Effective search space: 4552012414
Effective search space used: 4552012414
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 158 (65.5 bits)