BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0111000 Os12g0111000|AK064603
         (420 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os12g0111000  Conserved hypothetical protein                      555   e-158
Os11g0111333                                                      167   1e-41
Os02g0491300  Conserved hypothetical protein                       86   7e-17

>Os12g0111000 Conserved hypothetical protein
          Length = 420

 Score =  555 bits (1429), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 301/406 (74%), Positives = 301/406 (74%)

Query: 15  SDLDSTAPSQPPLHEPAATTNTTTGGCSPRAGDAASYRSTSPWTTSRLPLLRALHRPCXX 74
           SDLDSTAPSQPPLHEPAATTNTTTGGCSPRAGDAASYRSTSPWTTSRLPLLRALHRPC  
Sbjct: 15  SDLDSTAPSQPPLHEPAATTNTTTGGCSPRAGDAASYRSTSPWTTSRLPLLRALHRPCHR 74

Query: 75  XXXXXXXXXXXXXXXXINAASVVRIMIREAIDHYGFVALATRVMFAELERLANMTLFALD 134
                           INAASVVRIMIREAIDHYGFVALATRVMFAELERLANMTLFALD
Sbjct: 75  ALSHGLHHRHRHHQHHINAASVVRIMIREAIDHYGFVALATRVMFAELERLANMTLFALD 134

Query: 135 DQAIFVGEGHDDSVSARGPLPRRSRAPPHPCRSPATPRLLLICGIWRGGFGGATRAPLVV 194
           DQAIFVGEGHDDSVSARGPLPRRSRAPPHPCRSPATPRLLLICGIWRGGFGGATRAPLVV
Sbjct: 135 DQAIFVGEGHDDSVSARGPLPRRSRAPPHPCRSPATPRLLLICGIWRGGFGGATRAPLVV 194

Query: 195 QGRHGHPDTPPSSLAYWIPXXXXXXXXXXXXXATCSAPPXXXXXXXXXXXXXXXXXXXXX 254
           QGRHGHPDTPPSSLAYWIP             ATCSAPP                     
Sbjct: 195 QGRHGHPDTPPSSLAYWIPGTGGERRCTTRGTATCSAPPRRGGRGGARREGVEGPRRRRW 254

Query: 255 XXXXHAAQDRPHLAPPPADQVCHNWRAPSHPRRSSSGXXXXXXXXXXXXXXXXXXXXXXX 314
               HAAQDRPHLAPPPADQVCHNWRAPSHPRRSSSG                       
Sbjct: 255 RGLRHAAQDRPHLAPPPADQVCHNWRAPSHPRRSSSGAPHPRRLRHPRAPGRRTRHALLG 314

Query: 315 XXXXXXXXXXXXXXDALLSLHNLRRHQPLCTHVLPYPPKTSARVQGAWNRWVGGCCSCSS 374
                         DALLSLHNLRRHQPLCTHVLPYPPKTSARVQGAWNRWVGGCCSCSS
Sbjct: 315 LLRRWLGLHLLGPHDALLSLHNLRRHQPLCTHVLPYPPKTSARVQGAWNRWVGGCCSCSS 374

Query: 375 LQCRSYNADDYPAADFNVVASGQVLCXXXXXXXXXXXXGFYPVMLV 420
           LQCRSYNADDYPAADFNVVASGQVLC            GFYPVMLV
Sbjct: 375 LQCRSYNADDYPAADFNVVASGQVLCRSKSRRTTHRRRGFYPVMLV 420



>Os11g0111333 
          Length = 303

 Score =  167 bits (423), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 93/120 (77%), Positives = 95/120 (79%), Gaps = 14/120 (11%)

Query: 100 MIREAIDHYGFVALATRVMFAELERLANMTLFALDDQAIFVGEGHDDSVSARGPLPRRSR 159
           MIREAIDHYGFVALA RV FAEL+RL NMT+F LDDQAIFVGEGHDD VSARGPLPRRSR
Sbjct: 1   MIREAIDHYGFVALAMRVKFAELDRLPNMTVFPLDDQAIFVGEGHDDYVSARGPLPRRSR 60

Query: 160 APPHPCRSPA--------------TPRLLLICGIWRGGFGGATRAPLVVQGRHGHPDTPP 205
           APPHP R PA               PRLLLICGIWRG FGGATRAPLVVQGRHG PD PP
Sbjct: 61  APPHPRRHPAGRWEHRAVRAPPPLPPRLLLICGIWRGSFGGATRAPLVVQGRHGLPDIPP 120



>Os02g0491300 Conserved hypothetical protein
          Length = 583

 Score = 85.5 bits (210), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 45/61 (73%), Positives = 47/61 (77%), Gaps = 5/61 (8%)

Query: 96  VVRIMIREAI-----DHYGFVALATRVMFAELERLANMTLFALDDQAIFVGEGHDDSVSA 150
           VVRIMIREAI       YGFVALA RV FAELERLANMT+FALDDQAIFVG GHD   + 
Sbjct: 397 VVRIMIREAIARLRDSGYGFVALAMRVKFAELERLANMTVFALDDQAIFVGGGHDYVSAV 456

Query: 151 R 151
           R
Sbjct: 457 R 457



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.134    0.448 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,445,675
Number of extensions: 560816
Number of successful extensions: 2555
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 2550
Number of HSP's successfully gapped: 3
Length of query: 420
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 317
Effective length of database: 11,657,759
Effective search space: 3695509603
Effective search space used: 3695509603
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 157 (65.1 bits)