BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0106000 Os12g0106000|AF370029
         (255 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os12g0106000  Similar to Ferritin 1, chloroplast precursor (...   394   e-110
Os11g0106700  Similar to Ferritin 1, chloroplast precursor (...   254   6e-68
AK106949                                                          115   2e-26

>Os12g0106000 Similar to Ferritin 1, chloroplast precursor (EC 1.16.3.1) (ZmFer1)
          Length = 255

 Score =  394 bits (1013), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 200/255 (78%), Positives = 200/255 (78%)

Query: 1   MLPPRVXXXXXXXXXXXXXXXXXXXXXXXXXVWLPVPXXXXXXXXXXXXXXXXEVLSGVV 60
           MLPPRV                         VWLPVP                EVLSGVV
Sbjct: 1   MLPPRVAPSSLAAAAAAAPTYLAAAASTPASVWLPVPRGAGAVAVCRAAGKGKEVLSGVV 60

Query: 61  FQPFEELKGELSLVPQAKDQSLARQKFVDECEAAISEQINVEFNASYAYHSLFAYFDRDN 120
           FQPFEELKGELSLVPQAKDQSLARQKFVDECEAAISEQINVEFNASYAYHSLFAYFDRDN
Sbjct: 61  FQPFEELKGELSLVPQAKDQSLARQKFVDECEAAISEQINVEFNASYAYHSLFAYFDRDN 120

Query: 121 VALKGFAKFFKESSDEERDHAEKLMKYQNMRGGRVRLQSIVTPLTEFDHPEKGDXXXXXX 180
           VALKGFAKFFKESSDEERDHAEKLMKYQNMRGGRVRLQSIVTPLTEFDHPEKGD      
Sbjct: 121 VALKGFAKFFKESSDEERDHAEKLMKYQNMRGGRVRLQSIVTPLTEFDHPEKGDALYAME 180

Query: 181 XXXXXXXXVNEKLHNLHSVASRCNDPQLTDFVESEFLEEQVEAIKKISEYVAQLRRVGKG 240
                   VNEKLHNLHSVASRCNDPQLTDFVESEFLEEQVEAIKKISEYVAQLRRVGKG
Sbjct: 181 LALALEKLVNEKLHNLHSVASRCNDPQLTDFVESEFLEEQVEAIKKISEYVAQLRRVGKG 240

Query: 241 HGVWHFDQKLLEEEA 255
           HGVWHFDQKLLEEEA
Sbjct: 241 HGVWHFDQKLLEEEA 255



>Os11g0106700 Similar to Ferritin 1, chloroplast precursor (EC 1.16.3.1) (ZmFer1)
          Length = 183

 Score =  254 bits (648), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 124/143 (86%), Positives = 127/143 (88%)

Query: 32  VWLPVPXXXXXXXXXXXXXXXXEVLSGVVFQPFEELKGELSLVPQAKDQSLARQKFVDEC 91
           VWLPVP                EVLSGVVFQPFEELKGELSLVPQAKDQSLARQKFVDEC
Sbjct: 28  VWLPVPRGAGPGAVCRAAGKGKEVLSGVVFQPFEELKGELSLVPQAKDQSLARQKFVDEC 87

Query: 92  EAAISEQINVEFNASYAYHSLFAYFDRDNVALKGFAKFFKESSDEERDHAEKLMKYQNMR 151
           EAAI+EQINVE+NASYAYHSLFAYFDRDNVALKGFAKFFKESSDEERDHAEKL+KYQNMR
Sbjct: 88  EAAINEQINVEYNASYAYHSLFAYFDRDNVALKGFAKFFKESSDEERDHAEKLIKYQNMR 147

Query: 152 GGRVRLQSIVTPLTEFDHPEKGD 174
           GGRVRLQSIVTPLTEFDHPEKGD
Sbjct: 148 GGRVRLQSIVTPLTEFDHPEKGD 170



>AK106949 
          Length = 178

 Score =  115 bits (289), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 60/154 (38%), Positives = 93/154 (60%), Gaps = 4/154 (2%)

Query: 84  RQKFVDECEAAISEQINVEFNASYAYHSLFAYFDRDNVALKGFAKFFKESSDEERDHAEK 143
           RQ F  E EAA++   N+   ASY+Y SL  YFDRD+VAL   ++FF+E + ++R+ AE+
Sbjct: 8   RQNFSSEAEAAVNRLANLYLQASYSYLSLGFYFDRDDVALPRVSRFFRELAKDKREGAER 67

Query: 144 LMKYQNMRGGRVRLQSIVTPLTEFDHPEKGDXXXXXXXXXXXXXXVNEKLHNLHSVASRC 203
           LM+ QN RGGRV LQ++  P  +    E G               +N+ L  LH++ S  
Sbjct: 68  LMRLQNQRGGRVLLQAVQKPAQD----EWGRSLDAMEAALNLEKGLNQALLKLHALGSSQ 123

Query: 204 NDPQLTDFVESEFLEEQVEAIKKISEYVAQLRRV 237
            DP L DF+ES +L E+V+ +K++ ++++ LR +
Sbjct: 124 GDPHLCDFLESHYLGEEVKLLKRLGDHLSTLRHL 157



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.317    0.134    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,550,871
Number of extensions: 214003
Number of successful extensions: 497
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 496
Number of HSP's successfully gapped: 3
Length of query: 255
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 156
Effective length of database: 11,866,615
Effective search space: 1851191940
Effective search space used: 1851191940
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 155 (64.3 bits)