BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0102400 Os12g0102400|AK103750
(1097 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0102400 Zinc finger, RING-type domain containing protein 2176 0.0
Os11g0102800 Conserved hypothetical protein 560 e-159
Os01g0209500 RNA-binding region RNP-1 (RNA recognition moti... 147 4e-35
>Os12g0102400 Zinc finger, RING-type domain containing protein
Length = 1097
Score = 2176 bits (5638), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1047/1097 (95%), Positives = 1047/1097 (95%)
Query: 1 MMTMSDDGDRTCPLCAEDMDITDQQLKPCKCGYEICVWCWHHIIDMAEKEDTEGRCPACR 60
MMTMSDDGDRTCPLCAEDMDITDQQLKPCKCGYEICVWCWHHIIDMAEKEDTEGRCPACR
Sbjct: 1 MMTMSDDGDRTCPLCAEDMDITDQQLKPCKCGYEICVWCWHHIIDMAEKEDTEGRCPACR 60
Query: 61 TRYDKDRIVKMAATCDRTVVEXXXXXXXXXXXXXXXXXXXXEAKKHLASVRVIQRNLVYI 120
TRYDKDRIVKMAATCDRTVVE EAKKHLASVRVIQRNLVYI
Sbjct: 61 TRYDKDRIVKMAATCDRTVVEKNVDKKQKTQKVKSKAAVTVEAKKHLASVRVIQRNLVYI 120
Query: 121 IGLPANLCNESILERREYFGQYGKVLKVSVSRPTGAPSQQAPTNNSISVYITYAKEEEAI 180
IGLPANLCNESILERREYFGQYGKVLKVSVSRPTGAPSQQAPTNNSISVYITYAKEEEAI
Sbjct: 121 IGLPANLCNESILERREYFGQYGKVLKVSVSRPTGAPSQQAPTNNSISVYITYAKEEEAI 180
Query: 181 RCIQAVHNFVLEGKVLRACFGTTKYCHAWLRNMTCGNPDCLYLHDVGSQEDSFTKDEIIS 240
RCIQAVHNFVLEGKVLRACFGTTKYCHAWLRNMTCGNPDCLYLHDVGSQEDSFTKDEIIS
Sbjct: 181 RCIQAVHNFVLEGKVLRACFGTTKYCHAWLRNMTCGNPDCLYLHDVGSQEDSFTKDEIIS 240
Query: 241 AYTRSRVPQMASNVSQRRAGTVLPPPAEDFSYSAVVAAKHPIKNGITNTANQSRLSPPNS 300
AYTRSRVPQMASNVSQRRAGTVLPPPAEDFSYSAVVAAKHPIKNGITNTANQSRLSPPNS
Sbjct: 241 AYTRSRVPQMASNVSQRRAGTVLPPPAEDFSYSAVVAAKHPIKNGITNTANQSRLSPPNS 300
Query: 301 SSGRSTLPPAASWGHRDLNTRTTATGVASSQSLTKSKADPQXXXXXXXXXXXXXXXXXXW 360
SSGRSTLPPAASWGHRDLNTRTTATGVASSQSLTKSKADPQ W
Sbjct: 301 SSGRSTLPPAASWGHRDLNTRTTATGVASSQSLTKSKADPQSNSFSSSSTVSSTKLPSSW 360
Query: 361 NDDTSTVPKMTEGRDSLSKTLKPYKPGIAKETQAVTSLESSLDIDFSTIPSAWNDDDVTS 420
NDDTSTVPKMTEGRDSLSKTLKPYKPGIAKETQAVTSLESSLDIDFSTIPSAWNDDDVTS
Sbjct: 361 NDDTSTVPKMTEGRDSLSKTLKPYKPGIAKETQAVTSLESSLDIDFSTIPSAWNDDDVTS 420
Query: 421 DGMSKGSDEKQVVNDNGKFECSVSSKPAESGHLTSKSTTSPKKDIAVNSTRQSPLNCXXX 480
DGMSKGSDEKQVVNDNGKFECSVSSKPAESGHLTSKSTTSPKKDIAVNSTRQSPLNC
Sbjct: 421 DGMSKGSDEKQVVNDNGKFECSVSSKPAESGHLTSKSTTSPKKDIAVNSTRQSPLNCVSS 480
Query: 481 XXXXXXXXXDGDGDYQVTNMASKTSTLVIRKDQSNQAAIDTATEDTRSESTDIDRLSVGV 540
DGDGDYQVTNMASKTSTLVIRKDQSNQAAIDTATEDTRSESTDIDRLSVGV
Sbjct: 481 PSVSKSEVKDGDGDYQVTNMASKTSTLVIRKDQSNQAAIDTATEDTRSESTDIDRLSVGV 540
Query: 541 SSVTLSRKDGVQSIAENQQPDAILSTSVVVPFSQNLKLAECNDSTCQPSSDKHRDWCSDI 600
SSVTLSRKDGVQSIAENQQPDAILSTSVVVPFSQNLKLAECNDSTCQPSSDKHRDWCSDI
Sbjct: 541 SSVTLSRKDGVQSIAENQQPDAILSTSVVVPFSQNLKLAECNDSTCQPSSDKHRDWCSDI 600
Query: 601 QSSVSPQLNDIESYAVATDKSHGRVLDAADQASSSPYVHFPNTAPISLWNGKEINHTSTS 660
QSSVSPQLNDIESYAVATDKSHGRVLDAADQASSSPYVHFPNTAPISLWNGKEINHTSTS
Sbjct: 601 QSSVSPQLNDIESYAVATDKSHGRVLDAADQASSSPYVHFPNTAPISLWNGKEINHTSTS 660
Query: 661 DRTSTMMQPGLLSSVDSTSTMLNGHQEGLGTIYAPGKVSEHPRMKNHQPGAVGAVRIDNI 720
DRTSTMMQPGLLSSVDSTSTMLNGHQEGLGTIYAPGKVSEHPRMKNHQPGAVGAVRIDNI
Sbjct: 661 DRTSTMMQPGLLSSVDSTSTMLNGHQEGLGTIYAPGKVSEHPRMKNHQPGAVGAVRIDNI 720
Query: 721 GSFDKAVSVNKDESSIIADILSLEFDPWDESYSTANNFAKMLSASEKNDVLFDARSWKTK 780
GSFDKAVSVNKDESSIIADILSLEFDPWDESYSTANNFAKMLSASEKNDVLFDARSWKTK
Sbjct: 721 GSFDKAVSVNKDESSIIADILSLEFDPWDESYSTANNFAKMLSASEKNDVLFDARSWKTK 780
Query: 781 TSNSESRFSFARQDNQGSLLDSSMRNYKSEQNFSLPSQNSHGNIYQSGIAFQSPEEGFSK 840
TSNSESRFSFARQDNQGSLLDSSMRNYKSEQNFSLPSQNSHGNIYQSGIAFQSPEEGFSK
Sbjct: 781 TSNSESRFSFARQDNQGSLLDSSMRNYKSEQNFSLPSQNSHGNIYQSGIAFQSPEEGFSK 840
Query: 841 SNSLTMLDMLATGTSKPKVSAPPGFSAPARVPTGFSSGFSSHEGLNPPPGFSSHNGPNPP 900
SNSLTMLDMLATGTSKPKVSAPPGFSAPARVPTGFSSGFSSHEGLNPPPGFSSHNGPNPP
Sbjct: 841 SNSLTMLDMLATGTSKPKVSAPPGFSAPARVPTGFSSGFSSHEGLNPPPGFSSHNGPNPP 900
Query: 901 PGFSSQGGSNQIYGSAYSETRPFDDLLGINTSHYQPQLARQTSDIEFVDPAILAVGKGRM 960
PGFSSQGGSNQIYGSAYSETRPFDDLLGINTSHYQPQLARQTSDIEFVDPAILAVGKGRM
Sbjct: 901 PGFSSQGGSNQIYGSAYSETRPFDDLLGINTSHYQPQLARQTSDIEFVDPAILAVGKGRM 960
Query: 961 PGISDSGLEMKTSHTFPSQLQTSNDPRFQLLMQQNMPSHQNVGFAEHVQDAFNPMNDNYL 1020
PGISDSGLEMKTSHTFPSQLQTSNDPRFQLLMQQNMPSHQNVGFAEHVQDAFNPMNDNYL
Sbjct: 961 PGISDSGLEMKTSHTFPSQLQTSNDPRFQLLMQQNMPSHQNVGFAEHVQDAFNPMNDNYL 1020
Query: 1021 ASRLIPQNHGSLSSYTQMSLQQPRSSHLTNGHWDGWGDLRQGNNVSMPDMSRMLYPTEAN 1080
ASRLIPQNHGSLSSYTQMSLQQPRSSHLTNGHWDGWGDLRQGNNVSMPDMSRMLYPTEAN
Sbjct: 1021 ASRLIPQNHGSLSSYTQMSLQQPRSSHLTNGHWDGWGDLRQGNNVSMPDMSRMLYPTEAN 1080
Query: 1081 NFHMLGSNDLYNRAFGL 1097
NFHMLGSNDLYNRAFGL
Sbjct: 1081 NFHMLGSNDLYNRAFGL 1097
>Os11g0102800 Conserved hypothetical protein
Length = 270
Score = 560 bits (1444), Expect = e-159, Method: Compositional matrix adjust.
Identities = 266/270 (98%), Positives = 268/270 (99%)
Query: 828 GIAFQSPEEGFSKSNSLTMLDMLATGTSKPKVSAPPGFSAPARVPTGFSSGFSSHEGLNP 887
GIAFQSPEEGF+KSNSLTMLDMLATGTSKPKVSAPPGFSAPARVP GFSSGFSSHEGLNP
Sbjct: 1 GIAFQSPEEGFAKSNSLTMLDMLATGTSKPKVSAPPGFSAPARVPPGFSSGFSSHEGLNP 60
Query: 888 PPGFSSHNGPNPPPGFSSQGGSNQIYGSAYSETRPFDDLLGINTSHYQPQLARQTSDIEF 947
PPGFSSHNGPNPPPGFSSQGGSNQIYGSAYSETRPFD LLGINTSHYQPQLARQTSDIEF
Sbjct: 61 PPGFSSHNGPNPPPGFSSQGGSNQIYGSAYSETRPFDYLLGINTSHYQPQLARQTSDIEF 120
Query: 948 VDPAILAVGKGRMPGISDSGLEMKTSHTFPSQLQTSNDPRFQLLMQQNMPSHQNVGFAEH 1007
VDPAILAVGKGRMPGISDSGLEMKTSHTFPSQLQTSNDPRFQLLMQQN+PSHQNVGFAEH
Sbjct: 121 VDPAILAVGKGRMPGISDSGLEMKTSHTFPSQLQTSNDPRFQLLMQQNVPSHQNVGFAEH 180
Query: 1008 VQDAFNPMNDNYLASRLIPQNHGSLSSYTQMSLQQPRSSHLTNGHWDGWGDLRQGNNVSM 1067
VQDAFNPMNDNYLASRLIPQNHGSLSSYTQMSLQQPRSSHLTNGHWDGWGDLRQGNNVSM
Sbjct: 181 VQDAFNPMNDNYLASRLIPQNHGSLSSYTQMSLQQPRSSHLTNGHWDGWGDLRQGNNVSM 240
Query: 1068 PDMSRMLYPTEANNFHMLGSNDLYNRAFGL 1097
PDMSRMLYPTEANNFHMLGSNDLYNRAFGL
Sbjct: 241 PDMSRMLYPTEANNFHMLGSNDLYNRAFGL 270
>Os01g0209500 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 799
Score = 147 bits (372), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 70/167 (41%), Positives = 103/167 (61%), Gaps = 5/167 (2%)
Query: 109 SVRVIQRNLVYIIGLPANLCNESILERREYFGQYGKVLKVSVSRPTGAPSQQAPTNNSIS 168
SVRVIQR LVYI+G+P+ ++ +L + + GQYGK+ + + GA +QQ P +S
Sbjct: 63 SVRVIQRRLVYIVGMPSEFASDKVLRQHNFLGQYGKIESIIIDN-IGA-NQQIP--DSGR 118
Query: 169 VYITYAKEEEAIRCIQAVHNFVLEGKVLRACFGTTKYCHAWLRNMTCGNPDCLYLHDVGS 228
VY+T+++EEEA RCI+AV+ F+L+G+ L+A FG T+YCH WL N C P C Y+H
Sbjct: 119 VYVTFSREEEAFRCIEAVNGFILDGRPLKATFGVTRYCHVWLSNKVCRKPICSYVHQKAP 178
Query: 229 QEDSFTKDEIISAYTRSRVPQMASNVSQRRAGTVLPPPAEDFSYSAV 275
ED TKD+ ++ Y + + R+G LPPP + S + V
Sbjct: 179 PEDICTKDD-VAVYCARLQHLLGMDTKGLRSGNTLPPPGDCVSRTTV 224
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.312 0.127 0.371
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 36,668,350
Number of extensions: 1571138
Number of successful extensions: 4378
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 4368
Number of HSP's successfully gapped: 3
Length of query: 1097
Length of database: 17,035,801
Length adjustment: 111
Effective length of query: 986
Effective length of database: 11,240,047
Effective search space: 11082686342
Effective search space used: 11082686342
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 161 (66.6 bits)