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Os12g0102400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, RING-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.4 (0.0156) R2 : 0.0146
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0855 (0.0329) R2dN8 : 0.0188 R2N8 : 0.0146
σ : 0.294
deviance : 39.78
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
19.38 0.207 12.4 -1.01 0.317 0.612 0.103 -1.93 -9.93e-05 8.61 30.35 6078 -- --
20.37 0.21 12.4 -0.668 0.363 0.46 0.00544 -- 0.0424 8.52 29.8 6204 -- --
19.34 0.205 12.4 -1.01 0.304 0.595 -- -1.89 0.0143 8.66 30.4 5976 -- --
20.05 0.209 12.4 -0.619 0.323 0.406 -- -- 0.0473 8.86 29.91 6048 -- --
24.33 0.23 12.4 -1.05 -- 0.594 -- -2.02 -0.00124 -- 30.4 5886 -- --
27.33 0.245 12.4 -0.5 0.321 -- 0.0409 -- 0.028 8.91 -- -- -- --
27.33 0.245 12.4 -0.499 0.321 -- -- -- 0.028 8.89 -- -- -- --
25.54 0.235 12.4 -0.612 -- 0.395 -- -- 0.071 -- 30.47 5886 -- --
29.31 0.252 12.3 -- 0.317 0.314 -- -- 0.118 9.04 30.66 6004 -- --
33.22 0.269 12.4 -0.499 -- -- -- -- 0.0302 -- -- -- -- --
33.89 0.272 12.4 -- 0.32 -- -- -- 0.0835 9.01 -- -- -- --
34.99 0.276 12.3 -- -- 0.306 -- -- 0.13 -- 30.5 5885 -- --
39.78 0.294 12.4 -- -- -- -- -- 0.0855 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 19.40 temperature 10 720 > th dose dependent rect. 21 18
3 19.59 temperature 10 720 > th dose dependent rect. 23 16
4 19.62 temperature 10 720 > th dose dependent rect. 1 14
7 19.67 temperature 10 720 > th dose dependent rect. 21 16
12 19.72 temperature 10 720 > th dose dependent sin 5 NA
18 19.74 temperature 10 720 > th dose dependent rect. 3 8
19 19.76 temperature 10 720 > th dose dependent rect. 3 10
21 19.77 temperature 10 720 > th dose dependent rect. 3 12
22 19.78 temperature 15 720 > th dose dependent rect. 3 6
60 20.05 temperature 30 720 < th dose dependent rect. 22 14
64 20.06 temperature 10 270 > th dose dependent rect. 1 22
66 20.07 temperature 30 720 < th dose dependent rect. 2 9
67 20.07 temperature 15 270 > th dose dependent rect. 2 20
72 20.09 temperature 30 720 < th dose dependent sin 6 NA
80 20.10 temperature 15 90 > th dose dependent rect. 4 15
137 20.23 temperature 30 720 < th dose dependent rect. 5 6
173 20.32 temperature 15 10 > th dose dependent rect. 4 16
306 20.65 temperature 10 1440 > th dose dependent rect. 6 3
343 20.71 temperature 15 10 > th dose dependent rect. 4 20
460 20.86 temperature 10 90 > th dose dependent rect. 3 23
505 20.92 humidity 50 14400 < th dose dependent rect. 16 18
524 20.93 temperature 10 10 > th dose dependent rect. 3 23
545 20.96 humidity 50 14400 < th dose dependent rect. 16 1
615 21.02 temperature 25 4320 > th dose independent rect. 7 1
651 21.04 temperature 25 4320 < th dose independent rect. 7 1
727 21.07 temperature 30 1440 < th dose dependent rect. 18 1
749 21.08 temperature 15 1440 > th dose dependent rect. 18 1
796 21.10 temperature 30 270 < th dose dependent rect. 7 9
846 21.11 temperature 10 720 > th dose dependent rect. 12 23
926 21.15 radiation 20 1440 > th dose independent rect. 16 1
960 21.15 temperature 30 30 < th dose dependent rect. 9 19
994 21.16 temperature 15 1440 > th dose dependent rect. 3 19