BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0102400 Os12g0102400|AK103750
(1097 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G60170.2 | chr5:24228178-24232394 FORWARD LENGTH=988 400 e-111
AT3G45630.1 | chr3:16748751-16753190 REVERSE LENGTH=990 393 e-109
AT2G28540.2 | chr2:12218652-12223594 FORWARD LENGTH=961 375 e-104
AT1G74870.1 | chr1:28127093-28128275 FORWARD LENGTH=290 67 4e-11
AT5G62910.1 | chr5:25250830-25252015 FORWARD LENGTH=328 64 3e-10
AT3G48070.2 | chr3:17750878-17752297 FORWARD LENGTH=351 64 5e-10
>AT5G60170.2 | chr5:24228178-24232394 FORWARD LENGTH=988
Length = 987
Score = 400 bits (1029), Expect = e-111, Method: Compositional matrix adjust.
Identities = 201/337 (59%), Positives = 238/337 (70%), Gaps = 11/337 (3%)
Query: 4 MSDDGDRTCPLCAEDMDITDQQLKPCKCGYEICVWCWHHIIDMAEKEDTEGRCPACRTRY 63
MSD G++TCPLCAE+MD+TDQQLKPCKCGY+ICVWCWHHI+DMAEK+ EGRCPACRT Y
Sbjct: 1 MSDHGEKTCPLCAEEMDLTDQQLKPCKCGYQICVWCWHHIVDMAEKDQIEGRCPACRTPY 60
Query: 64 DKDRIVKMAATCDRTVVEXXXXXXXXXXXXXXXXXXXXEAKKHLASVRVIQRNLVYIIGL 123
DK++IV M CD E K+ L SVRVIQRNLVYI+GL
Sbjct: 61 DKEKIVGMTVNCDSLASEGNMERKKIQKSKSKSSEGR---KQQLTSVRVIQRNLVYIVGL 117
Query: 124 PANLCNESILERREYFGQYGKVLKVSVSRPTGAPSQQAPTNNSISVYITYAKEEEAIRCI 183
P NL +E +L+ +EYFGQYGKVLKVS+SR QQ P NN+ SVYITY KEEEA+RCI
Sbjct: 118 PLNLADEDLLQHKEYFGQYGKVLKVSMSRTASGVIQQFP-NNTCSVYITYGKEEEAVRCI 176
Query: 184 QAVHNFVLEGKVLRACFGTTKYCHAWLRNMTCGNPDCLYLHDVGSQEDSFTKDEIISAYT 243
QAVH F+L+GK L+ACFGTTKYCHAWLRN+ C NPDCLYLH+VGSQ+DSFTKDEIISAYT
Sbjct: 177 QAVHGFILDGKPLKACFGTTKYCHAWLRNVACVNPDCLYLHEVGSQDDSFTKDEIISAYT 236
Query: 244 RSRVPQM--ASNVSQRRAGTVLPPPAEDFSYSAVVAAKHPIKNGITNTANQSRL---SPP 298
RSRV Q+ A+N+ Q +G +LPPP + + S +AK IK TN + R S
Sbjct: 237 RSRVQQITGATNILQHHSGNMLPPPLDAYC-SDSSSAKPIIKVPSTNATSVPRYSPPSGS 295
Query: 299 NSSSGRSTLPPAASWG-HRDLNTRTTATGVASSQSLT 334
SSS + LP AASWG H+ L T T+ G + Q T
Sbjct: 296 GSSSRSTALPAAASWGTHQSLATSVTSNGSSDIQRST 332
Score = 153 bits (387), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 137/406 (33%), Positives = 205/406 (50%), Gaps = 83/406 (20%)
Query: 729 VNKDESSIIADILSLEFDPWDESYSTANNFAKMLSASEKNDVLFDARSWKTKTSNSESRF 788
VN E +I+++ILSL+FDPWDES ++ +N A++L ++ ++ K N++SRF
Sbjct: 628 VNNAEDAILSNILSLDFDPWDESLTSPHNLAELLGEVDQRSSTLKPSNF-LKQHNNQSRF 686
Query: 789 SFARQDNQGSLLDSSMRNYKSEQNFSLPSQNSHG----------NIYQSGIAFQSPEEGF 838
SFAR + +SS + Y SE N+S+ Q S +IY++ + GF
Sbjct: 687 SFARYE------ESSNQAYDSE-NYSIYGQLSRDKPIQESAMSRDIYRNNLG---SVNGF 736
Query: 839 SKSNSLTMLDMLATG---------TSKPKVSAPPGFSAPARVPTGFSSGFSSHEGLNPPP 889
+ SN LD A S+P+VSAPPGFSAP R+P PP
Sbjct: 737 A-SNFAGGLDNFAASPLFSSHKNPVSRPQVSAPPGFSAPNRLP---------------PP 780
Query: 890 GFSSHNGPNPPPGFSSQGGSNQIYGSAYSETRPFDDLLGINTSHYQPQLARQ--TSDIEF 947
GFSSH G SS + G+ + ++ N P + SDI+F
Sbjct: 781 GFSSHERV----GLSS----DTTLGNRFLDSTSLR-----NAYQVPPPVGNSNGASDIDF 827
Query: 948 VDPAILAVGKGRMPGISDSGLEMKTSHTFPSQLQT-SNDPRFQLLMQQNMPSHQNV-GFA 1005
VDPAILAVG+G + ++ L+M++ F SQL + N+ +L QQ++ S Q V GF
Sbjct: 828 VDPAILAVGRGMV----NADLDMRSG--FSSQLNSFENETGLHMLRQQSLSSAQQVNGFH 881
Query: 1006 EHVQDAFNPMNDNY-LASRLIPQNHG-SLSSYTQMSLQQPRS-SHLTNG-HWDGWGDLRQ 1061
+++ +ND Y +SRL+ Q G SLS ++Q+ QQP + S L+NG HWD W + +
Sbjct: 882 HDLRNLSPSLNDPYGFSSRLMDQTQGSSLSPFSQLPRQQPSANSILSNGHHWDKWNEGQS 941
Query: 1062 GNNVSMPDMSR--------MLYPT--EANNFHMLGSNDLYNRAFGL 1097
NN+ M ++ R LY E F + D+YNR +G+
Sbjct: 942 VNNIGMAELLRNERLGFNGSLYNNGYEEPKFRIPSPGDVYNRTYGI 987
>AT3G45630.1 | chr3:16748751-16753190 REVERSE LENGTH=990
Length = 989
Score = 393 bits (1010), Expect = e-109, Method: Compositional matrix adjust.
Identities = 191/337 (56%), Positives = 237/337 (70%), Gaps = 9/337 (2%)
Query: 4 MSDDGDRTCPLCAEDMDITDQQLKPCKCGYEICVWCWHHIIDMAEKEDTEGRCPACRTRY 63
MSD G++TCPLCAE+MD+TDQQLKPCKCGY+ICVWCWHHI+DMAEK+ +EGRCPACRT Y
Sbjct: 1 MSDYGEKTCPLCAEEMDLTDQQLKPCKCGYQICVWCWHHIMDMAEKDQSEGRCPACRTPY 60
Query: 64 DKDRIVKMAATCDRTVVEXXXXXXXXXXXXXXXXXXXXEAKKHLASVRVIQRNLVYIIGL 123
DK++IV M +R E + +K L SVRV+QRNLVYI+GL
Sbjct: 61 DKEKIVGMTVDQERLASEGNMDRKKIQKSKPKSS----DGRKPLTSVRVVQRNLVYIVGL 116
Query: 124 PANLCNESILERREYFGQYGKVLKVSVSRPTGAPSQQAPTNNSISVYITYAKEEEAIRCI 183
P NL +E +L+R+EYFGQYGKVLKVS+SR QQ P NN+ SVYITY KEEEAIRCI
Sbjct: 117 PLNLADEDLLQRKEYFGQYGKVLKVSMSRTATGLIQQFP-NNTCSVYITYGKEEEAIRCI 175
Query: 184 QAVHNFVLEGKVLRACFGTTKYCHAWLRNMTCGNPDCLYLHDVGSQEDSFTKDEIISAYT 243
Q+VH F+L+GK L+ACFGTTKYCHAWLRN+ C N DCLYLH+VGSQEDSFTKDEIISA+T
Sbjct: 176 QSVHGFILDGKALKACFGTTKYCHAWLRNVACNNQDCLYLHEVGSQEDSFTKDEIISAHT 235
Query: 244 RSRVPQMASNVSQRRAGTVLPPPAEDFSYSAVVAAKHPIKN--GITNTANQSRLSPPNSS 301
R + A+N Q R+G++LPPP + +Y++ + +PI T+ + P SS
Sbjct: 236 RVQQITGATNTMQYRSGSMLPPPLD--AYTSDSSTGNPIAKVPSSTSVSAPKSSPPSGSS 293
Query: 302 SGRSTLPPAASWGHRDLNTRTTATGVASSQSLTKSKA 338
+ LP AASWG R N + AT S+ SL ++
Sbjct: 294 GKSTALPAAASWGARLTNQHSLATSALSNGSLDNQRS 330
Score = 141 bits (356), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 127/405 (31%), Positives = 192/405 (47%), Gaps = 78/405 (19%)
Query: 729 VNKDESSIIADILSLEFDPWDESYSTANNFAKMLSASEKNDVLFDARSWKTKTSNSESRF 788
+ E II++IL +FDPWDES ++ +NFAK+L S+ ++ + K N +SRF
Sbjct: 627 IQNTEDDIISNIL--DFDPWDESLTSQHNFAKLLGQSDHRASTLESSNL-LKQHNDQSRF 683
Query: 789 SFARQ--------DNQGSLLDSSMRNYKSEQNFS---------LPSQNSHGNIYQSGIAF 831
SFAR DN+ + + + Q F L SQN + Y G
Sbjct: 684 SFARHEESNSQAYDNRSYSIYGQLSRDQPLQEFGANRDMYQDKLGSQNGFASNYSGGY-- 741
Query: 832 QSPEEGFSKSNSLTMLDMLATGTSKPKVSAPPGFSAPARVPTGFSSGFSSHEGLNPPPGF 891
E F+ S L+ + ++ +VSAPPGFSAP R+P PPGF
Sbjct: 742 ----EQFATSPGLSSY---KSPVARTQVSAPPGFSAPNRLP---------------PPGF 779
Query: 892 SSHNGPNPPPGFSSQGGSNQIYGSAYSETRPFDDLLGINTSHYQPQLA---RQTSDIEFV 948
SSH Q G + S TR D + +++ P + DIEF+
Sbjct: 780 SSH-----------QRGD--LSSDIASGTRLLDSANLLRNAYHVPPPSGNLNAAGDIEFI 826
Query: 949 DPAILAVGKGRMP-GISDSGLEMKTSHTFPSQLQT-SNDPRFQLLMQQNMPSHQNVGFAE 1006
DPAILAVG+GR+ G+ + ++++ F SQL + ND R QLL Q+++ + Q GF +
Sbjct: 827 DPAILAVGRGRLHNGMETADFDLRSG--FSSQLNSFDNDARLQLLAQRSLAAQQVNGFHD 884
Query: 1007 --HVQDAFNPMNDNY-LASRLIPQNHGS-LSSYTQMSLQQPRSSHLTNGHWDG-WGDLRQ 1061
+V + + +D Y ++SR Q G+ LS +TQ+ Q + L+NGHWD W + +
Sbjct: 885 PRNVNNFSSSFSDPYGISSRPTDQTQGTGLSPFTQLPRQASANPLLSNGHWDNKWNEPQS 944
Query: 1062 GNNVSMPDMSR---------MLYPTEANNFHMLGSNDLYNRAFGL 1097
GNN+ + + R + E F G D YNR +G+
Sbjct: 945 GNNLGITQLLRNERMGFNDNVYSGFEEPKFRRPGPGDPYNRTYGI 989
>AT2G28540.2 | chr2:12218652-12223594 FORWARD LENGTH=961
Length = 960
Score = 375 bits (964), Expect = e-104, Method: Compositional matrix adjust.
Identities = 173/314 (55%), Positives = 223/314 (71%), Gaps = 9/314 (2%)
Query: 4 MSDDGDRTCPLCAEDMDITDQQLKPCKCGYEICVWCWHHIIDMAEKEDTEGRCPACRTRY 63
M++ G++TCPLC E+MD+TDQ LKPCKCGY+ICVWCWHHII+MAEK+ TEGRCPACRTRY
Sbjct: 1 MNEKGEKTCPLCTEEMDLTDQHLKPCKCGYQICVWCWHHIIEMAEKDKTEGRCPACRTRY 60
Query: 64 DKDRIVKMAATCDRTVVEXXXXXXXXXXXXXXXXXXXXEAKKHLASVRVIQRNLVYIIGL 123
DK++IV M +C+R V E E +K L VRVIQRNLVY++ L
Sbjct: 61 DKEKIVGMTVSCERLVAE----FYIDRKKSQKAKPKPAEGRKDLTGVRVIQRNLVYVMSL 116
Query: 124 PANLCNESILERREYFGQYGKVLKVSVSRPTGAPSQQAPTNNSISVYITYAKEEEAIRCI 183
P +L +E + +RREYFGQYGKV+KV++SR QQ P NN+ SVYITY+KEEEAIRCI
Sbjct: 117 PFDLADEDMFQRREYFGQYGKVVKVAMSRTAAGAVQQFP-NNTCSVYITYSKEEEAIRCI 175
Query: 184 QAVHNFVLEGKVLRACFGTTKYCHAWLRNMTCGNPDCLYLHDVGSQEDSFTKDEIISAYT 243
++VH F+L+G+ L+ACFGT KYCHAWLRNM C N +CLYLH++G+QEDSF+KDE ISA+
Sbjct: 176 RSVHGFILDGRNLKACFGTMKYCHAWLRNMPCSNAECLYLHEIGAQEDSFSKDETISAHM 235
Query: 244 RSRVPQMAS--NVSQRRAGTVLPPPAEDFSYSAVVAAKHPIKNGITNTANQSRLSPPNSS 301
R V + + RR+G++LPPP +D+ + P K + N + ++ SPPN S
Sbjct: 236 RKMVQDITGWRDHYVRRSGSMLPPPVDDYVDNESSTRIIP-KVVLNNVHSAAKNSPPNDS 294
Query: 302 SGRS-TLPPAASWG 314
+ S TLP A WG
Sbjct: 295 NSHSVTLPAGAMWG 308
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 99/346 (28%), Positives = 154/346 (44%), Gaps = 85/346 (24%)
Query: 736 IIADILSLEFDPWDESYSTANNFAKMLSASEKNDVLFDARSWK----TKTSNSESRFSFA 791
IIA+I+SL+ D E ++ +N+A S++ +ARS K +K +++SRFSFA
Sbjct: 641 IIANIMSLDLD---EYLTSPHNYANPFGESDE-----EARSLKLASSSKVEDNQSRFSFA 692
Query: 792 RQDNQGSLLDSSMRNYKSEQNFSLPSQNSHGN-IYQSGIAFQSPEEG-FSKSNSLTM--- 846
RQ+ D + +Y + +Q S GN YQ+ QSP G F N L+
Sbjct: 693 RQEEPK---DQAFDSYNAS------NQMSRGNDFYQNSSERQSPNMGMFGTYNGLSSCYR 743
Query: 847 --LDMLATGTSKPKVSAPPGFSAPARVPTGFSSGFSSHEGLNPPPGFS-SHNGPNPPPGF 903
LD + ++ P P ++ R P ++ PPGFS PPPGF
Sbjct: 744 RGLDYVTESSTLPSSYKP---TSVPRCP------------VSAPPGFSVPTPSRPPPPGF 788
Query: 904 SSQGGSNQIYGSAYSETRPFDDLLGINTSHYQPQL-ARQTSDIEFVDPAILAVGKGRMPG 962
SS G +Q+ +S F D + +HYQ L D++++DPAILAVG+ G
Sbjct: 789 SSNGRDHQMI-DGFSGNSRFSDSIAYG-NHYQQSLPIENVRDVQYMDPAILAVGQ----G 842
Query: 963 ISDSGLEMKTSHTFPSQLQTS-------------NDPRFQLLMQQNMPSHQNVGFAEHVQ 1009
++ L+ +++ + + S +P L MQ + SHQN F + +
Sbjct: 843 FENASLDFRSNFQGNTNMYGSAAKLQQQQQQAVMQNP---LSMQNPLSSHQNCRFTDSLG 899
Query: 1010 DAFNPMNDNYLASRLIPQNHGSLSSYTQMSLQQPRSSHLTNGHWDG 1055
+A R I Q+ G+ M+ L NGHW+G
Sbjct: 900 ----------MAPRFIDQSQGNNLLTRNMA--------LPNGHWNG 927
>AT1G74870.1 | chr1:28127093-28128275 FORWARD LENGTH=290
Length = 289
Score = 67.4 bits (163), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 37/59 (62%), Gaps = 6/59 (10%)
Query: 7 DGDRTCPLCAEDMDITDQQLKPCKCGYEICVWCWHHIIDMAEKEDTEGRCPACRTRYDK 65
DGD CP+C+E MD TD + +PC CG+ IC++C + I + E RCPACR Y K
Sbjct: 207 DGDEECPICSELMDATDLEFEPCTCGFRICLFCHNKI------SENEARCPACRKDYKK 259
>AT5G62910.1 | chr5:25250830-25252015 FORWARD LENGTH=328
Length = 327
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 6/58 (10%)
Query: 11 TCPLCAEDMDITDQQLKPCKCGYEICVWCWHHIIDMAEKEDTEGRCPACRTRYDKDRI 68
+CP+C ED+D+TD PC CG+ +C++C I D +GRCP CR Y+++ +
Sbjct: 251 SCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTIC------DGDGRCPGCRKPYERNMV 302
>AT3G48070.2 | chr3:17750878-17752297 FORWARD LENGTH=351
Length = 350
Score = 63.9 bits (154), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 6/58 (10%)
Query: 11 TCPLCAEDMDITDQQLKPCKCGYEICVWCWHHIIDMAEKEDTEGRCPACRTRYDKDRI 68
+CP+C ED+D+TD PC CG+ +C++C I D +GRCP CR Y+++ I
Sbjct: 243 SCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTIC------DGDGRCPGCRKPYERNTI 294
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.312 0.127 0.371
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 23,498,562
Number of extensions: 1016014
Number of successful extensions: 3066
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 3034
Number of HSP's successfully gapped: 9
Length of query: 1097
Length of database: 11,106,569
Length adjustment: 109
Effective length of query: 988
Effective length of database: 8,118,225
Effective search space: 8020806300
Effective search space used: 8020806300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 117 (49.7 bits)