BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0708500 Os11g0708500|AK063409
(363 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0708500 Vitamin B6 biosynthesis protein family protein 640 0.0
Os07g0100200 Similar to PDX1-like protein 4 508 e-144
Os10g0100700 Vitamin B6 biosynthesis protein family protein 498 e-141
AK107701 393 e-109
Os01g0574700 157 1e-38
Os10g0170500 148 7e-36
Os10g0191650 125 5e-29
>Os11g0708500 Vitamin B6 biosynthesis protein family protein
Length = 363
Score = 640 bits (1651), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 317/363 (87%), Positives = 317/363 (87%)
Query: 1 MASSDDGVVALYGGGKVSCKPPAATFSVKVGLAQMLRGGVIMDVVTPEQARLAEEAGACA 60
MASSDDGVVALYGGGKVSCKPPAATFSVKVGLAQMLRGGVIMDVVTPEQARLAEEAGACA
Sbjct: 1 MASSDDGVVALYGGGKVSCKPPAATFSVKVGLAQMLRGGVIMDVVTPEQARLAEEAGACA 60
Query: 61 VMALERVPADIRAQGGVARMSDPALIRDIKRAVTIPVMAKARIGHFVEAQILEAIGVDYV 120
VMALERVPADIRAQGGVARMSDPALIRDIKRAVTIPVMAKARIGHFVEAQILEAIGVDYV
Sbjct: 61 VMALERVPADIRAQGGVARMSDPALIRDIKRAVTIPVMAKARIGHFVEAQILEAIGVDYV 120
Query: 121 DESEVLTPADDAHHINKHNFRVPFVCGCRDLGEALRRIREGAAMIRTKGEAGTGNVVEAV 180
DESEVLTPADDAHHINKHNFRVPFVCGCRDLGEALRRIREGAAMIRTKGEAGTGNVVEAV
Sbjct: 121 DESEVLTPADDAHHINKHNFRVPFVCGCRDLGEALRRIREGAAMIRTKGEAGTGNVVEAV 180
Query: 181 RHVRSVMGEIRALRNMDDDEVFSYAKRIAAPYDLVMQTKQLGRLPVVQFXXXXXXXXXXX 240
RHVRSVMGEIRALRNMDDDEVFSYAKRIAAPYDLVMQTKQLGRLPVVQF
Sbjct: 181 RHVRSVMGEIRALRNMDDDEVFSYAKRIAAPYDLVMQTKQLGRLPVVQFAAGGVATPADA 240
Query: 241 XLMMQLGCDGVFVGSGIFKSGDPARRARAIVQAVTHYSDPEILADVSAGLGDXXXXXXXX 300
LMMQLGCDGVFVGSGIFKSGDPARRARAIVQAVTHYSDPEILADVSAGLGD
Sbjct: 241 ALMMQLGCDGVFVGSGIFKSGDPARRARAIVQAVTHYSDPEILADVSAGLGDAMSASTST 300
Query: 301 XXXXXXXXXXXXEQXXXXXXXXXXXXXXAPHRWMVNVNQQSSSLTNFLLTMDWRMDDCCC 360
EQ APHRWMVNVNQQSSSLTNFLLTMDWRMDDCCC
Sbjct: 301 TKMSSATPPAPTEQLLLLLLLPLSSSLSAPHRWMVNVNQQSSSLTNFLLTMDWRMDDCCC 360
Query: 361 HYY 363
HYY
Sbjct: 361 HYY 363
>Os07g0100200 Similar to PDX1-like protein 4
Length = 318
Score = 508 bits (1309), Expect = e-144, Method: Compositional matrix adjust.
Identities = 257/298 (86%), Positives = 266/298 (89%), Gaps = 6/298 (2%)
Query: 1 MASSDDGVVALYGGGKVSC------KPPAATFSVKVGLAQMLRGGVIMDVVTPEQARLAE 54
MA+ GVV +YG G +ATFSVKVGLAQMLRGGVIMDVVTPEQAR+AE
Sbjct: 1 MATDGTGVVTVYGSGTNGAALLEPSNHKSATFSVKVGLAQMLRGGVIMDVVTPEQARIAE 60
Query: 55 EAGACAVMALERVPADIRAQGGVARMSDPALIRDIKRAVTIPVMAKARIGHFVEAQILEA 114
EAGACAVMALERVPADIRAQGGVARMSDP LIRDIKRAVTIPVMAKARIGHFVEAQILEA
Sbjct: 61 EAGACAVMALERVPADIRAQGGVARMSDPGLIRDIKRAVTIPVMAKARIGHFVEAQILEA 120
Query: 115 IGVDYVDESEVLTPADDAHHINKHNFRVPFVCGCRDLGEALRRIREGAAMIRTKGEAGTG 174
IGVDYVDESEVLT ADDAHHINKHNFRVPFVCGCRDLGEALRRIREGAAMIRTKGEAGTG
Sbjct: 121 IGVDYVDESEVLTLADDAHHINKHNFRVPFVCGCRDLGEALRRIREGAAMIRTKGEAGTG 180
Query: 175 NVVEAVRHVRSVMGEIRALRNMDDDEVFSYAKRIAAPYDLVMQTKQLGRLPVVQFXXXXX 234
NVVEAVRHVRSVMG+IRALRNMDDDEVFSYAKRIAAPYDLVMQTKQLGRLPVVQF
Sbjct: 181 NVVEAVRHVRSVMGDIRALRNMDDDEVFSYAKRIAAPYDLVMQTKQLGRLPVVQFAAGGV 240
Query: 235 XXXXXXXLMMQLGCDGVFVGSGIFKSGDPARRARAIVQAVTHYSDPEILADVSAGLGD 292
LMMQLGCDGVFVGSGIFKSGDPARRARAIVQAVTHYSDP+ILA+VS+GLG+
Sbjct: 241 ATPADAALMMQLGCDGVFVGSGIFKSGDPARRARAIVQAVTHYSDPKILAEVSSGLGE 298
>Os10g0100700 Vitamin B6 biosynthesis protein family protein
Length = 313
Score = 498 bits (1282), Expect = e-141, Method: Compositional matrix adjust.
Identities = 252/292 (86%), Positives = 263/292 (90%), Gaps = 1/292 (0%)
Query: 1 MASSDDGVVALYGGGKVSCKPPAATFSVKVGLAQMLRGGVIMDVVTPEQARLAEEAGACA 60
MAS VVALYGG + +FSVKVGLAQMLRGGVIMDVVTPEQAR+AEEAGACA
Sbjct: 1 MASDGTDVVALYGGAN-GLSHKSGSFSVKVGLAQMLRGGVIMDVVTPEQARIAEEAGACA 59
Query: 61 VMALERVPADIRAQGGVARMSDPALIRDIKRAVTIPVMAKARIGHFVEAQILEAIGVDYV 120
VMALERVPADIRAQGGVARMSDP LIRDIKR+VTIPVMAKARIGH VEAQILEAIGVDYV
Sbjct: 60 VMALERVPADIRAQGGVARMSDPGLIRDIKRSVTIPVMAKARIGHLVEAQILEAIGVDYV 119
Query: 121 DESEVLTPADDAHHINKHNFRVPFVCGCRDLGEALRRIREGAAMIRTKGEAGTGNVVEAV 180
DESEVLT ADDAHHINK+NFRVPFVCGCRDLGEALRRIREGAAMIRTKGEAGTGNVVEAV
Sbjct: 120 DESEVLTLADDAHHINKNNFRVPFVCGCRDLGEALRRIREGAAMIRTKGEAGTGNVVEAV 179
Query: 181 RHVRSVMGEIRALRNMDDDEVFSYAKRIAAPYDLVMQTKQLGRLPVVQFXXXXXXXXXXX 240
RHVRSVMG+IRALR+MDDDEVFSYAKRIAAPYDLVMQTKQLGRLPVVQF
Sbjct: 180 RHVRSVMGDIRALRSMDDDEVFSYAKRIAAPYDLVMQTKQLGRLPVVQFAAGGVATPADA 239
Query: 241 XLMMQLGCDGVFVGSGIFKSGDPARRARAIVQAVTHYSDPEILADVSAGLGD 292
LMMQLGCDGVFVGSGIFKSGDPA RARAIVQAVTHYSDP+ILA+VS+GLG+
Sbjct: 240 ALMMQLGCDGVFVGSGIFKSGDPALRARAIVQAVTHYSDPKILAEVSSGLGE 291
>AK107701
Length = 307
Score = 393 bits (1009), Expect = e-109, Method: Compositional matrix adjust.
Identities = 190/268 (70%), Positives = 222/268 (82%)
Query: 25 TFSVKVGLAQMLRGGVIMDVVTPEQARLAEEAGACAVMALERVPADIRAQGGVARMSDPA 84
F+VK GLA+ML+GGVIMDVV EQAR+AEEAGA AVMALERVPADIRAQGGVARMSDP
Sbjct: 19 NFAVKAGLARMLKGGVIMDVVNAEQARIAEEAGASAVMALERVPADIRAQGGVARMSDPK 78
Query: 85 LIRDIKRAVTIPVMAKARIGHFVEAQILEAIGVDYVDESEVLTPADDAHHINKHNFRVPF 144
+I++I VTIPVMAKARIGHFVE QILEA+GVDYVDESEVLTPAD HH++KH FR+PF
Sbjct: 79 MIKEIMETVTIPVMAKARIGHFVECQILEALGVDYVDESEVLTPADAVHHVDKHPFRIPF 138
Query: 145 VCGCRDLGEALRRIREGAAMIRTKGEAGTGNVVEAVRHVRSVMGEIRALRNMDDDEVFSY 204
VCGCR+LGEALRRI EGAAMIRTKGEAGTG+V+EAVRH+R+V EI+ +M E+++Y
Sbjct: 139 VCGCRNLGEALRRISEGAAMIRTKGEAGTGDVIEAVRHMRTVNAEIQRASSMSSTELYNY 198
Query: 205 AKRIAAPYDLVMQTKQLGRLPVVQFXXXXXXXXXXXXLMMQLGCDGVFVGSGIFKSGDPA 264
AK + Y+L+ +T +LGRLPVV F LMMQLGCDGVFVGSGIFKSGD A
Sbjct: 199 AKELGVDYNLLKETAKLGRLPVVNFAAGGVATPADAALMMQLGCDGVFVGSGIFKSGDAA 258
Query: 265 RRARAIVQAVTHYSDPEILADVSAGLGD 292
+RA+AIVQAVTHY DP++L +VS LG+
Sbjct: 259 KRAKAIVQAVTHYKDPKVLMEVSMDLGE 286
>Os01g0574700
Length = 113
Score = 157 bits (397), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 77/90 (85%), Positives = 78/90 (86%)
Query: 187 MGEIRALRNMDDDEVFSYAKRIAAPYDLVMQTKQLGRLPVVQFXXXXXXXXXXXXLMMQL 246
MGEIRALRNMDDDEVF+YAKRIAAPYDLVMQTKQLGRLPVVQF LMMQL
Sbjct: 1 MGEIRALRNMDDDEVFAYAKRIAAPYDLVMQTKQLGRLPVVQFAAGGVTTPADAALMMQL 60
Query: 247 GCDGVFVGSGIFKSGDPARRARAIVQAVTH 276
GCDGVFVGSGIFKSGDPARRARAIVQAVTH
Sbjct: 61 GCDGVFVGSGIFKSGDPARRARAIVQAVTH 90
>Os10g0170500
Length = 187
Score = 148 bits (373), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 72/90 (80%), Positives = 73/90 (81%)
Query: 187 MGEIRALRNMDDDEVFSYAKRIAAPYDLVMQTKQLGRLPVVQFXXXXXXXXXXXXLMMQL 246
MGEIRAL NMDDDEVF+YA RIAAPYDLVMQTKQLGRLPVVQF LMMQ
Sbjct: 1 MGEIRALHNMDDDEVFAYANRIAAPYDLVMQTKQLGRLPVVQFATGNVATPADAALMMQP 60
Query: 247 GCDGVFVGSGIFKSGDPARRARAIVQAVTH 276
GCDGVFV SGIFKSGDPARRA AIVQAVTH
Sbjct: 61 GCDGVFVSSGIFKSGDPARRAHAIVQAVTH 90
>Os10g0191650
Length = 279
Score = 125 bits (314), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 61/81 (75%), Positives = 64/81 (79%)
Query: 196 MDDDEVFSYAKRIAAPYDLVMQTKQLGRLPVVQFXXXXXXXXXXXXLMMQLGCDGVFVGS 255
MDDDEVF+YAKRIAAPYDLVMQTKQLGRLPVV F LMMQLGCDG+FVGS
Sbjct: 1 MDDDEVFAYAKRIAAPYDLVMQTKQLGRLPVVLFAAGGVATPADAALMMQLGCDGIFVGS 60
Query: 256 GIFKSGDPARRARAIVQAVTH 276
IFKSGD AR AR IVQA+TH
Sbjct: 61 SIFKSGDHARHARTIVQAITH 81
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.323 0.136 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,601,487
Number of extensions: 379674
Number of successful extensions: 892
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 885
Number of HSP's successfully gapped: 7
Length of query: 363
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 261
Effective length of database: 11,709,973
Effective search space: 3056302953
Effective search space used: 3056302953
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 157 (65.1 bits)