Os07g0100200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to PDX1-like protein 4.
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Os07g0100200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to PDX1-like protein 4.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 58.98 | 0.361 | 14.6 | 0.978 | 2.14 | -1.41 | 1.35 | 3.7 | -0.171 | 7.36 | 16.86 | 1743 | -- | -- |
| 71.06 | 0.393 | 14.7 | 0.328 | 2.22 | -1.42 | 1.52 | -- | -0.254 | 7.19 | 13.92 | 8184 | -- | -- |
| 63.55 | 0.371 | 14.6 | 1.01 | 2.19 | -1.42 | -- | 3.75 | -0.165 | 7.31 | 16.59 | 1611 | -- | -- |
| 74.73 | 0.403 | 14.7 | 0.425 | 2.22 | -1.51 | -- | -- | -0.253 | 7.18 | 8.264 | 8305 | -- | -- |
| 186.71 | 0.636 | 14.6 | 1.17 | -- | -2.84 | -- | 4.76 | 0.018 | -- | 21.85 | 546 | -- | -- |
| 107.06 | 0.485 | 14.8 | -0.4 | 2.21 | -- | 1.33 | -- | -0.689 | 7.36 | -- | -- | -- | -- |
| 111.82 | 0.495 | 14.8 | -0.371 | 2.21 | -- | -- | -- | -0.692 | 7.31 | -- | -- | -- | -- |
| 203.49 | 0.664 | 14.7 | 0.651 | -- | -2.97 | -- | -- | -0.136 | -- | 17.39 | 566 | -- | -- |
| 77.88 | 0.411 | 14.7 | -- | 2.2 | -1.27 | -- | -- | -0.363 | 7.2 | 8.173 | 8054 | -- | -- |
| 372.21 | 0.901 | 14.8 | -0.333 | -- | -- | -- | -- | -0.655 | -- | -- | -- | -- | -- |
| 115.45 | 0.503 | 14.7 | -- | 2.21 | -- | -- | -- | -0.651 | 7.32 | -- | -- | -- | -- |
| 204.24 | 0.666 | 14.7 | -- | -- | -2.71 | -- | -- | -0.237 | -- | 18.13 | 529 | -- | -- |
| 375.14 | 0.904 | 14.8 | -- | -- | -- | -- | -- | -0.618 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 58.85 | temperature | 15 | 1440 | > th | dose dependent | rect. | 16 | 17 |
| 20 | 59.11 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 16 |
| 28 | 59.16 | temperature | 30 | 1440 | < th | dose dependent | rect. | 20 | 3 |
| 30 | 59.17 | temperature | 15 | 1440 | > th | dose dependent | sin | 12 | NA |
| 34 | 59.20 | temperature | 15 | 1440 | > th | dose dependent | rect. | 20 | 3 |
| 44 | 59.23 | temperature | 15 | 1440 | > th | dose dependent | rect. | 21 | 1 |
| 112 | 59.49 | temperature | 30 | 1440 | < th | dose dependent | sin | 12 | NA |
| 136 | 59.58 | temperature | 30 | 720 | < th | dose dependent | rect. | 8 | 21 |
| 346 | 60.24 | temperature | 30 | 1440 | < th | dose dependent | rect. | 2 | 7 |
| 358 | 60.26 | temperature | 15 | 1440 | > th | dose dependent | rect. | 2 | 7 |
| 513 | 60.60 | temperature | 15 | 1440 | > th | dose dependent | no | NA | NA |
| 551 | 60.67 | temperature | 15 | 1440 | > th | dose dependent | rect. | 24 | 23 |
| 562 | 60.69 | temperature | 15 | 1440 | > th | dose dependent | rect. | 7 | 23 |
| 568 | 60.70 | temperature | 15 | 1440 | > th | dose dependent | rect. | 2 | 23 |
| 605 | 60.75 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 11 |
| 636 | 60.79 | temperature | 15 | 1440 | > th | dose dependent | rect. | 5 | 23 |
| 660 | 60.83 | temperature | 30 | 1440 | < th | dose dependent | no | NA | NA |
| 687 | 60.86 | temperature | 30 | 1440 | < th | dose dependent | rect. | 24 | 23 |
| 691 | 60.87 | temperature | 30 | 1440 | < th | dose dependent | rect. | 2 | 23 |
| 708 | 60.90 | temperature | 25 | 1440 | < th | dose dependent | rect. | 5 | 1 |
| 779 | 61.00 | temperature | 30 | 1440 | < th | dose dependent | rect. | 5 | 23 |
| 939 | 61.23 | temperature | 25 | 4320 | < th | dose independent | rect. | 11 | 1 |
| 945 | 61.24 | temperature | 15 | 1440 | > th | dose dependent | rect. | 5 | 1 |