BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0100200 Os07g0100200|AK073305
(318 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0100200 Similar to PDX1-like protein 4 580 e-166
Os10g0100700 Vitamin B6 biosynthesis protein family protein 543 e-155
Os11g0708500 Vitamin B6 biosynthesis protein family protein 507 e-144
AK107701 408 e-114
Os01g0574700 156 2e-38
Os10g0170500 149 3e-36
Os10g0191650 127 1e-29
>Os07g0100200 Similar to PDX1-like protein 4
Length = 318
Score = 580 bits (1496), Expect = e-166, Method: Compositional matrix adjust.
Identities = 292/318 (91%), Positives = 292/318 (91%)
Query: 1 MATDXXXXXXXXXXXXXXAALLEPSNHKSATFSVKVGLAQMLRGGVIMDVVTPEQARIAE 60
MATD AALLEPSNHKSATFSVKVGLAQMLRGGVIMDVVTPEQARIAE
Sbjct: 1 MATDGTGVVTVYGSGTNGAALLEPSNHKSATFSVKVGLAQMLRGGVIMDVVTPEQARIAE 60
Query: 61 EAGACAVMALERVPADIRAQGGVARMSDPGLIRDIKRAVTIPVMAKARIGHFVEAQILEA 120
EAGACAVMALERVPADIRAQGGVARMSDPGLIRDIKRAVTIPVMAKARIGHFVEAQILEA
Sbjct: 61 EAGACAVMALERVPADIRAQGGVARMSDPGLIRDIKRAVTIPVMAKARIGHFVEAQILEA 120
Query: 121 IGVDYVDESEVLTLADDAHHINKHNFRVPFVCGCRDLGEALRRIREGAAMIRTKGEAGTG 180
IGVDYVDESEVLTLADDAHHINKHNFRVPFVCGCRDLGEALRRIREGAAMIRTKGEAGTG
Sbjct: 121 IGVDYVDESEVLTLADDAHHINKHNFRVPFVCGCRDLGEALRRIREGAAMIRTKGEAGTG 180
Query: 181 NVVEAVRHVRSVMGDIRALRNMDDDEVFSYAKRIAAPYDLVMQTKQLGRLPVVQFXXXXX 240
NVVEAVRHVRSVMGDIRALRNMDDDEVFSYAKRIAAPYDLVMQTKQLGRLPVVQF
Sbjct: 181 NVVEAVRHVRSVMGDIRALRNMDDDEVFSYAKRIAAPYDLVMQTKQLGRLPVVQFAAGGV 240
Query: 241 XXXXXXXLMMQLGCDGVFVGSGIFKSGDPARRARAIVQAVTHYSDPKILAEVSSGLGEAM 300
LMMQLGCDGVFVGSGIFKSGDPARRARAIVQAVTHYSDPKILAEVSSGLGEAM
Sbjct: 241 ATPADAALMMQLGCDGVFVGSGIFKSGDPARRARAIVQAVTHYSDPKILAEVSSGLGEAM 300
Query: 301 VGINLSDPKVERFAARSE 318
VGINLSDPKVERFAARSE
Sbjct: 301 VGINLSDPKVERFAARSE 318
>Os10g0100700 Vitamin B6 biosynthesis protein family protein
Length = 313
Score = 543 bits (1398), Expect = e-155, Method: Compositional matrix adjust.
Identities = 272/295 (92%), Positives = 278/295 (94%), Gaps = 2/295 (0%)
Query: 26 NHKSATFSVKVGLAQMLRGGVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVAR 85
+HKS +FSVKVGLAQMLRGGVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVAR
Sbjct: 19 SHKSGSFSVKVGLAQMLRGGVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVAR 78
Query: 86 MSDPGLIRDIKRAVTIPVMAKARIGHFVEAQILEAIGVDYVDESEVLTLADDAHHINKHN 145
MSDPGLIRDIKR+VTIPVMAKARIGH VEAQILEAIGVDYVDESEVLTLADDAHHINK+N
Sbjct: 79 MSDPGLIRDIKRSVTIPVMAKARIGHLVEAQILEAIGVDYVDESEVLTLADDAHHINKNN 138
Query: 146 FRVPFVCGCRDLGEALRRIREGAAMIRTKGEAGTGNVVEAVRHVRSVMGDIRALRNMDDD 205
FRVPFVCGCRDLGEALRRIREGAAMIRTKGEAGTGNVVEAVRHVRSVMGDIRALR+MDDD
Sbjct: 139 FRVPFVCGCRDLGEALRRIREGAAMIRTKGEAGTGNVVEAVRHVRSVMGDIRALRSMDDD 198
Query: 206 EVFSYAKRIAAPYDLVMQTKQLGRLPVVQFXXXXXXXXXXXXLMMQLGCDGVFVGSGIFK 265
EVFSYAKRIAAPYDLVMQTKQLGRLPVVQF LMMQLGCDGVFVGSGIFK
Sbjct: 199 EVFSYAKRIAAPYDLVMQTKQLGRLPVVQFAAGGVATPADAALMMQLGCDGVFVGSGIFK 258
Query: 266 SGDPARRARAIVQAVTHYSDPKILAEVSSGLGEAMVGINLSDPK--VERFAARSE 318
SGDPA RARAIVQAVTHYSDPKILAEVSSGLGEAMVGINLSDPK VERFAARS+
Sbjct: 259 SGDPALRARAIVQAVTHYSDPKILAEVSSGLGEAMVGINLSDPKIHVERFAARSD 313
>Os11g0708500 Vitamin B6 biosynthesis protein family protein
Length = 363
Score = 507 bits (1306), Expect = e-144, Method: Compositional matrix adjust.
Identities = 251/272 (92%), Positives = 258/272 (94%)
Query: 29 SATFSVKVGLAQMLRGGVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSD 88
+ATFSVKVGLAQMLRGGVIMDVVTPEQAR+AEEAGACAVMALERVPADIRAQGGVARMSD
Sbjct: 23 AATFSVKVGLAQMLRGGVIMDVVTPEQARLAEEAGACAVMALERVPADIRAQGGVARMSD 82
Query: 89 PGLIRDIKRAVTIPVMAKARIGHFVEAQILEAIGVDYVDESEVLTLADDAHHINKHNFRV 148
P LIRDIKRAVTIPVMAKARIGHFVEAQILEAIGVDYVDESEVLT ADDAHHINKHNFRV
Sbjct: 83 PALIRDIKRAVTIPVMAKARIGHFVEAQILEAIGVDYVDESEVLTPADDAHHINKHNFRV 142
Query: 149 PFVCGCRDLGEALRRIREGAAMIRTKGEAGTGNVVEAVRHVRSVMGDIRALRNMDDDEVF 208
PFVCGCRDLGEALRRIREGAAMIRTKGEAGTGNVVEAVRHVRSVMG+IRALRNMDDDEVF
Sbjct: 143 PFVCGCRDLGEALRRIREGAAMIRTKGEAGTGNVVEAVRHVRSVMGEIRALRNMDDDEVF 202
Query: 209 SYAKRIAAPYDLVMQTKQLGRLPVVQFXXXXXXXXXXXXLMMQLGCDGVFVGSGIFKSGD 268
SYAKRIAAPYDLVMQTKQLGRLPVVQF LMMQLGCDGVFVGSGIFKSGD
Sbjct: 203 SYAKRIAAPYDLVMQTKQLGRLPVVQFAAGGVATPADAALMMQLGCDGVFVGSGIFKSGD 262
Query: 269 PARRARAIVQAVTHYSDPKILAEVSSGLGEAM 300
PARRARAIVQAVTHYSDP+ILA+VS+GLG+AM
Sbjct: 263 PARRARAIVQAVTHYSDPEILADVSAGLGDAM 294
>AK107701
Length = 307
Score = 408 bits (1048), Expect = e-114, Method: Compositional matrix adjust.
Identities = 207/304 (68%), Positives = 239/304 (78%), Gaps = 6/304 (1%)
Query: 19 AALLEPSNHKSA-----TFSVKVGLAQMLRGGVIMDVVTPEQARIAEEAGACAVMALERV 73
A L +N SA F+VK GLA+ML+GGVIMDVV EQARIAEEAGA AVMALERV
Sbjct: 2 ATELPTTNGHSAQDGENNFAVKAGLARMLKGGVIMDVVNAEQARIAEEAGASAVMALERV 61
Query: 74 PADIRAQGGVARMSDPGLIRDIKRAVTIPVMAKARIGHFVEAQILEAIGVDYVDESEVLT 133
PADIRAQGGVARMSDP +I++I VTIPVMAKARIGHFVE QILEA+GVDYVDESEVLT
Sbjct: 62 PADIRAQGGVARMSDPKMIKEIMETVTIPVMAKARIGHFVECQILEALGVDYVDESEVLT 121
Query: 134 LADDAHHINKHNFRVPFVCGCRDLGEALRRIREGAAMIRTKGEAGTGNVVEAVRHVRSVM 193
AD HH++KH FR+PFVCGCR+LGEALRRI EGAAMIRTKGEAGTG+V+EAVRH+R+V
Sbjct: 122 PADAVHHVDKHPFRIPFVCGCRNLGEALRRISEGAAMIRTKGEAGTGDVIEAVRHMRTVN 181
Query: 194 GDIRALRNMDDDEVFSYAKRIAAPYDLVMQTKQLGRLPVVQFXXXXXXXXXXXXLMMQLG 253
+I+ +M E+++YAK + Y+L+ +T +LGRLPVV F LMMQLG
Sbjct: 182 AEIQRASSMSSTELYNYAKELGVDYNLLKETAKLGRLPVVNFAAGGVATPADAALMMQLG 241
Query: 254 CDGVFVGSGIFKSGDPARRARAIVQAVTHYSDPKILAEVSSGLGEAMVGINLSD-PKVER 312
CDGVFVGSGIFKSGD A+RA+AIVQAVTHY DPK+L EVS LGEAMVGIN D + +R
Sbjct: 242 CDGVFVGSGIFKSGDAAKRAKAIVQAVTHYKDPKVLMEVSMDLGEAMVGINCGDLGEKDR 301
Query: 313 FAAR 316
A R
Sbjct: 302 LAKR 305
>Os01g0574700
Length = 113
Score = 156 bits (395), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 76/90 (84%), Positives = 78/90 (86%)
Query: 193 MGDIRALRNMDDDEVFSYAKRIAAPYDLVMQTKQLGRLPVVQFXXXXXXXXXXXXLMMQL 252
MG+IRALRNMDDDEVF+YAKRIAAPYDLVMQTKQLGRLPVVQF LMMQL
Sbjct: 1 MGEIRALRNMDDDEVFAYAKRIAAPYDLVMQTKQLGRLPVVQFAAGGVTTPADAALMMQL 60
Query: 253 GCDGVFVGSGIFKSGDPARRARAIVQAVTH 282
GCDGVFVGSGIFKSGDPARRARAIVQAVTH
Sbjct: 61 GCDGVFVGSGIFKSGDPARRARAIVQAVTH 90
>Os10g0170500
Length = 187
Score = 149 bits (375), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 71/90 (78%), Positives = 73/90 (81%)
Query: 193 MGDIRALRNMDDDEVFSYAKRIAAPYDLVMQTKQLGRLPVVQFXXXXXXXXXXXXLMMQL 252
MG+IRAL NMDDDEVF+YA RIAAPYDLVMQTKQLGRLPVVQF LMMQ
Sbjct: 1 MGEIRALHNMDDDEVFAYANRIAAPYDLVMQTKQLGRLPVVQFATGNVATPADAALMMQP 60
Query: 253 GCDGVFVGSGIFKSGDPARRARAIVQAVTH 282
GCDGVFV SGIFKSGDPARRA AIVQAVTH
Sbjct: 61 GCDGVFVSSGIFKSGDPARRAHAIVQAVTH 90
>Os10g0191650
Length = 279
Score = 127 bits (318), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 61/81 (75%), Positives = 64/81 (79%)
Query: 202 MDDDEVFSYAKRIAAPYDLVMQTKQLGRLPVVQFXXXXXXXXXXXXLMMQLGCDGVFVGS 261
MDDDEVF+YAKRIAAPYDLVMQTKQLGRLPVV F LMMQLGCDG+FVGS
Sbjct: 1 MDDDEVFAYAKRIAAPYDLVMQTKQLGRLPVVLFAAGGVATPADAALMMQLGCDGIFVGS 60
Query: 262 GIFKSGDPARRARAIVQAVTH 282
IFKSGD AR AR IVQA+TH
Sbjct: 61 SIFKSGDHARHARTIVQAITH 81
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.136 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,006,868
Number of extensions: 338813
Number of successful extensions: 780
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 780
Number of HSP's successfully gapped: 7
Length of query: 318
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 217
Effective length of database: 11,762,187
Effective search space: 2552394579
Effective search space used: 2552394579
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 156 (64.7 bits)