Os11g0708500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Vitamin B6 biosynthesis protein family protein.
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Os11g0708500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Vitamin B6 biosynthesis protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 92.02 | 0.451 | 8.91 | 2.08 | 3.1 | -1.56 | -0.913 | 3.95 | 0.0234 | 17.5 | 12.07 | 1151 | -- | -- |
| 100.95 | 0.468 | 8.98 | 1.57 | 3.12 | -1.51 | -1.19 | -- | -0.0702 | 17.3 | 10.18 | 7077 | -- | -- |
| 94.04 | 0.452 | 8.91 | 2.11 | 3.09 | -1.57 | -- | 4.07 | 0.0263 | 17.5 | 12.13 | 1154 | -- | -- |
| 104.63 | 0.476 | 8.99 | 1.58 | 3.1 | -1.54 | -- | -- | -0.0672 | 17.4 | 10.09 | 7010 | -- | -- |
| 580.49 | 1.12 | 8.84 | 2.13 | -- | -2.12 | -- | 3.69 | 0.0482 | -- | 4.011 | 1263 | -- | -- |
| 141.08 | 0.557 | 9.07 | 0.8 | 3.16 | -- | -1.24 | -- | -0.459 | 17.3 | -- | -- | -- | -- |
| 144.89 | 0.564 | 9.08 | 0.801 | 3.15 | -- | -- | -- | -0.465 | 17.3 | -- | -- | -- | -- |
| 591.36 | 1.13 | 8.95 | 1.33 | -- | -2.07 | -- | -- | -0.169 | -- | 12.36 | 1275 | -- | -- |
| 144.09 | 0.559 | 9.06 | -- | 3.08 | -0.973 | -- | -- | -0.414 | 17.4 | 12.06 | 1237 | -- | -- |
| 664.3 | 1.2 | 9.04 | 0.692 | -- | -- | -- | -- | -0.544 | -- | -- | -- | -- | -- |
| 161.78 | 0.595 | 9.1 | -- | 3.14 | -- | -- | -- | -0.554 | 17.3 | -- | -- | -- | -- |
| 602.97 | 1.15 | 9.09 | -- | -- | 1.69 | -- | -- | -0.782 | -- | 24 | 1288 | -- | -- |
| 676.93 | 1.21 | 9.05 | -- | -- | -- | -- | -- | -0.621 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 90.54 | humidity | 50 | 43200 | > th | dose independent | rect. | 23 | 5 |
| 2 | 90.97 | temperature | 10 | 1440 | > th | dose dependent | rect. | 9 | 13 |
| 4 | 91.00 | temperature | 10 | 1440 | > th | dose dependent | rect. | 9 | 10 |
| 53 | 91.42 | temperature | 10 | 1440 | > th | dose dependent | sin | 21 | NA |
| 82 | 91.71 | humidity | 70 | 14400 | < th | dose dependent | rect. | 19 | 12 |
| 108 | 91.88 | humidity | 70 | 14400 | < th | dose dependent | rect. | 19 | 3 |
| 148 | 92.23 | temperature | 10 | 1440 | > th | dose dependent | rect. | 13 | 10 |
| 163 | 92.30 | temperature | 15 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 240 | 92.79 | temperature | 30 | 720 | < th | dose dependent | rect. | 18 | 21 |
| 241 | 92.80 | temperature | 10 | 1440 | > th | dose dependent | rect. | 15 | 4 |
| 361 | 93.68 | humidity | 60 | 14400 | < th | dose independent | rect. | 18 | 2 |
| 369 | 93.74 | temperature | 30 | 1440 | < th | dose dependent | rect. | 8 | 14 |
| 387 | 93.83 | temperature | 15 | 90 | > th | dose dependent | rect. | 3 | 19 |
| 500 | 94.30 | temperature | 15 | 10 | > th | dose dependent | rect. | 3 | 19 |
| 506 | 94.33 | temperature | 30 | 1440 | < th | dose dependent | sin | 21 | NA |
| 521 | 94.38 | temperature | 15 | 720 | > th | dose dependent | rect. | 16 | 21 |
| 591 | 94.60 | temperature | 10 | 1440 | > th | dose dependent | no | NA | NA |
| 597 | 94.61 | temperature | 15 | 720 | > th | dose dependent | rect. | 17 | 19 |
| 599 | 94.63 | humidity | 60 | 14400 | > th | dose independent | rect. | 18 | 10 |
| 601 | 94.64 | humidity | 60 | 14400 | > th | dose independent | rect. | 18 | 2 |
| 605 | 94.66 | radiation | 30 | 4320 | < th | dose independent | rect. | 23 | 9 |
| 630 | 94.71 | temperature | 30 | 1440 | < th | dose dependent | rect. | 15 | 8 |
| 656 | 94.79 | temperature | 10 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 766 | 95.09 | radiation | 30 | 4320 | < th | dose independent | rect. | 17 | 15 |
| 789 | 95.18 | wind | 9 | 43200 | > th | dose dependent | rect. | 17 | 6 |
| 871 | 95.42 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 3 |