BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0707100 Os11g0707100|Os11g0707100
(366 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0707100 Similar to Ribulose-bisphosphate carboxylase a... 723 0.0
Os11g0707000 Similar to Ribulose-bisphosphate carboxylase a... 116 3e-26
Os04g0658300 Similar to Ribulose bisphosphate carboxylase/o... 72 9e-13
>Os11g0707100 Similar to Ribulose-bisphosphate carboxylase activase (EC 6.3.4.-)
(Fragments)
Length = 366
Score = 723 bits (1867), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/366 (96%), Positives = 352/366 (96%)
Query: 1 MASAFSSTVGAPGSGLVVKNWLRTAGYSHHGGRSRCRCRKIMAMAGGSSKEVDEEKQTEQ 60
MASAFSSTVGAPGSGLVVKNWLRTAGYSHHGGRSRCRCRKIMAMAGGSSKEVDEEKQTEQ
Sbjct: 1 MASAFSSTVGAPGSGLVVKNWLRTAGYSHHGGRSRCRCRKIMAMAGGSSKEVDEEKQTEQ 60
Query: 61 DRWKGLAYDISDDQQDITRGKGLVDSLFQAPMGDGTHEARVPQPGSQNVQPGQHHGHISK 120
DRWKGLAYDISDDQQDITRGKGLVDSLFQAPMGDGTHEARVPQPGSQNVQPGQHHGHISK
Sbjct: 61 DRWKGLAYDISDDQQDITRGKGLVDSLFQAPMGDGTHEARVPQPGSQNVQPGQHHGHISK 120
Query: 121 NLMKLPNIQGKSFQCDLVFAKMGINLIMMSAGEPAKLIRQRYREAADMINKGKMCVLFIN 180
NLMKLPNIQGKSFQCDLVFAKMGINLIMMSAGEPAKLIRQRYREAADMINKGKMCVLFIN
Sbjct: 121 NLMKLPNIQGKSFQCDLVFAKMGINLIMMSAGEPAKLIRQRYREAADMINKGKMCVLFIN 180
Query: 181 DLDAGRHDAVHGEQPDGERDADEHRGQPHQRAAPRDVQXXXXXXXXXXXXXXHPRRAHGQ 240
DLDAGRHDAVHGEQPDGERDADEHRGQPHQRAAPRDVQ HPRRAHGQ
Sbjct: 181 DLDAGRHDAVHGEQPDGERDADEHRGQPHQRAAPRDVQPPSPSSSPATTSPAHPRRAHGQ 240
Query: 241 VLLGSHPRGPHWRVQGHLPQRQGPRRVPIDFFGALRARVYGDEVRRWVAEIGVENIGRRL 300
VLLGSHPRGPHWRVQGHLPQRQGPRRVPIDFFGALRARVYGDEVRRWVAEIGVENIGRRL
Sbjct: 241 VLLGSHPRGPHWRVQGHLPQRQGPRRVPIDFFGALRARVYGDEVRRWVAEIGVENIGRRL 300
Query: 301 ENVKRVRLADKYLSEAALGDANHDSGEFYGKAEQQSPVPVPAGCTDQRAANYDPTARSDD 360
ENVKRVRLADKYLSEAALGDANHDSGEFYGKAEQQSPVPVPAGCTDQRAANYDPTARSDD
Sbjct: 301 ENVKRVRLADKYLSEAALGDANHDSGEFYGKAEQQSPVPVPAGCTDQRAANYDPTARSDD 360
Query: 361 GSCVYN 366
GSCVYN
Sbjct: 361 GSCVYN 366
>Os11g0707000 Similar to Ribulose-bisphosphate carboxylase activase (EC 6.3.4.-)
(Fragments)
Length = 350
Score = 116 bits (291), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 62/90 (68%), Positives = 64/90 (71%), Gaps = 21/90 (23%)
Query: 117 HISKNLMKLPNI-------------QGKSFQCDLVFAKMGINLIMMSAGE--------PA 155
HISKN M LPNI QGKSFQC+LVFAKMGIN IMMSAGE PA
Sbjct: 52 HISKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPA 111
Query: 156 KLIRQRYREAADMINKGKMCVLFINDLDAG 185
KLIRQRYREAAD+I KGKMC LFINDLDAG
Sbjct: 112 KLIRQRYREAADIIKKGKMCCLFINDLDAG 141
>Os04g0658300 Similar to Ribulose bisphosphate carboxylase/oxygenase activase,
chloroplast precursor (RuBisCO activase) (RA)
Length = 441
Score = 71.6 bits (174), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 43/92 (46%), Positives = 55/92 (59%), Gaps = 23/92 (25%)
Query: 117 HISKNLM------KLPNI--------QGKSFQCDLVFAKMGINLIMMS--------AGEP 154
HI KN + K+P I QGK+FQ +L+F MG+ ++MS AGEP
Sbjct: 158 HIVKNYLAHILTIKIPLILGIWGGKGQGKTFQTELIFRAMGVEPVIMSAGELESEKAGEP 217
Query: 155 AKLIRQRYREAADMI-NKGKMCVLFINDLDAG 185
+LIR RYR A+ +I N+GKM VL INDLDAG
Sbjct: 218 GRLIRDRYRTASQVIQNQGKMSVLMINDLDAG 249
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.135 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 14,214,254
Number of extensions: 648284
Number of successful extensions: 1698
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1695
Number of HSP's successfully gapped: 3
Length of query: 366
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 264
Effective length of database: 11,709,973
Effective search space: 3091432872
Effective search space used: 3091432872
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 157 (65.1 bits)