Os04g0658300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Ribulose bisphosphate carboxylase/oxygenase activase, chloroplast precursor (RuBisCO activase) (RA).
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Os04g0658300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Ribulose bisphosphate carboxylase/oxygenase activase, chloroplast precursor (RuBisCO activase) (RA).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 50.27 | 0.333 | 9.98 | -1.1 | 0.771 | 0.755 | -0.18 | 1.08 | -0.995 | 3.53 | 71.08 | 7615 | -- | -- |
| 51.59 | 0.335 | 9.98 | -1.19 | 0.788 | 0.847 | -0.196 | -- | -1.06 | 3.7 | 72.49 | 7757 | -- | -- |
| 50.11 | 0.33 | 9.99 | -1.06 | 0.803 | 0.748 | -- | 0.994 | -1.03 | 3.59 | 73.95 | 7679 | -- | -- |
| 51.17 | 0.333 | 9.99 | -1.18 | 0.778 | 0.872 | -- | -- | -1.12 | 3.74 | 75 | 7802 | -- | -- |
| 76.95 | 0.409 | 9.99 | -1.03 | -- | 0.811 | -- | 0.967 | -1.02 | -- | 72.68 | 8342 | -- | -- |
| 64.06 | 0.375 | 9.93 | -1.28 | 0.73 | -- | -0.118 | -- | -0.839 | 3.32 | -- | -- | -- | -- |
| 64.1 | 0.375 | 9.93 | -1.28 | 0.73 | -- | -- | -- | -0.838 | 3.33 | -- | -- | -- | -- |
| 78.32 | 0.412 | 10 | -1.13 | -- | 0.9 | -- | -- | -1.14 | -- | 74.48 | 8338 | -- | -- |
| 87.11 | 0.435 | 9.98 | -- | 0.758 | 1.09 | -- | -- | -1.08 | 3.66 | 75 | 7819 | -- | -- |
| 94.15 | 0.453 | 9.93 | -1.25 | -- | -- | -- | -- | -0.819 | -- | -- | -- | -- | -- |
| 107.4 | 0.485 | 9.9 | -- | 0.704 | -- | -- | -- | -0.696 | 3.33 | -- | -- | -- | -- |
| 100.57 | 0.467 | 9.88 | -- | -- | 1.14 | -- | -- | -0.615 | -- | 63.79 | 47520 | -- | -- |
| 135.42 | 0.543 | 9.9 | -- | -- | -- | -- | -- | -0.68 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 48.42 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 15 |
| 3 | 48.47 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 4 | 14 |
| 4 | 48.47 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 4 | 14 |
| 5 | 48.48 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 4 | 14 |
| 7 | 48.52 | wind | 1.0 | 14400 | > th | dose independent | rect. | 24 | 6 |
| 14 | 48.73 | wind | 1.0 | 14400 | < th | dose independent | rect. | 1 | 5 |
| 29 | 48.95 | precipitation | 0.1 | 14400 | > th | dose dependent | sin | 0 | NA |
| 40 | 49.06 | wind | 1.0 | 14400 | > th | dose independent | rect. | 1 | 2 |
| 46 | 49.15 | wind | 1.0 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 47 | 49.15 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 3 |
| 65 | 49.30 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 2 |
| 66 | 49.30 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 2 |
| 70 | 49.34 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 2 |
| 114 | 49.58 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 4 | 17 |
| 115 | 49.58 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 4 | 17 |
| 116 | 49.59 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 4 | 17 |
| 144 | 49.69 | precipitation | 0.1 | 14400 | < th | dose independent | sin | 0 | NA |
| 145 | 49.69 | precipitation | 0.1 | 14400 | < th | dose dependent | sin | 0 | NA |
| 148 | 49.70 | precipitation | 0.1 | 14400 | > th | dose independent | sin | 0 | NA |
| 156 | 49.75 | wind | 1.0 | 14400 | > th | dose independent | rect. | 4 | 2 |
| 274 | 50.13 | wind | 1.0 | 14400 | > th | dose independent | rect. | 2 | 8 |
| 294 | 50.19 | wind | 1.0 | 14400 | < th | dose independent | rect. | 2 | 8 |
| 406 | 50.53 | wind | 5.0 | 14400 | < th | dose dependent | rect. | 24 | 1 |
| 409 | 50.56 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 2 | 5 |
| 429 | 50.65 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 10 | 3 |
| 440 | 50.72 | precipitation | 0.1 | 14400 | > th | dose dependent | no | NA | NA |
| 442 | 50.72 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 12 | 23 |
| 443 | 50.72 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 14 | 23 |
| 487 | 50.79 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 9 | 23 |
| 502 | 50.82 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 18 | 19 |
| 507 | 50.84 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 538 | 50.92 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 10 | 3 |
| 542 | 50.93 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 10 | 1 |
| 611 | 51.05 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 24 | 1 |
| 622 | 51.07 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 18 | 20 |
| 632 | 51.08 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 15 | 20 |
| 663 | 51.14 | wind | 1.0 | 14400 | < th | dose independent | rect. | 1 | 2 |
| 676 | 51.18 | humidity | 50.0 | 14400 | > th | dose independent | sin | 11 | NA |
| 776 | 51.43 | humidity | 60.0 | 14400 | > th | dose independent | sin | 5 | NA |
| 893 | 51.58 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 4 | 2 |
| 984 | 51.74 | humidity | 60.0 | 14400 | < th | dose independent | sin | 3 | NA |
| 995 | 51.75 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 2 | 8 |