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Os11g0707100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Ribulose-bisphosphate carboxylase activase (EC 6.3.4.-) (Fragments).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 14.5 (0.0301) R2 : 0.898
β1 : -0.764 (0.111) R2dD : 0.0112 R2D : 0.00529
β2 : 3.02 (0.0997) R2dC : 0.343 R2C : 0.643
β3 : -2.45 (0.112) R2dE : 0.181 R2E : 0.51
β4 : 3.86 (0.342) R2dD*C : 0.0281 R2D*C : 0.0356
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.527 (0.0646) R2dN8 : 0.0212 R2N8 : 0.016
σ : 0.562
deviance : 145.44
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_____
C
peak time of C : 7.44
E
wheather : temperature
threshold : 25.22
memory length : 283
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 13.7
open length of G : 3.28

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
145.73 0.567 14.5 -0.808 3.02 -2.44 3.67 -0.491 -0.551 7.42 25.1 281 13.8 3.18
145.44 0.562 14.5 -0.764 3.02 -2.45 3.86 -- -0.527 7.44 25.22 283 13.7 3.28
174.14 0.615 14.4 -0.859 2.88 -2.48 -- -2.75 -0.591 7.36 24.3 290 13.6 3.44
185.15 0.634 14.5 -0.67 2.99 -2.49 -- -- -0.537 7.42 25.2 282 13.7 3.28
233.77 0.712 14.7 -0.229 -- -3.79 -- -1.92 -0.415 -- 20.2 459 12 5.58
281.68 0.787 14.5 -0.967 4.47 -- 4.38 -- -0.727 6.98 -- -- -- --
331.44 0.853 14.5 -0.888 4.49 -- -- -- -0.739 6.93 -- -- -- --
220.34 0.691 14.5 -0.363 -- -4.32 -- -- -0.412 -- 19.75 488 11.6 5.92
196.02 0.652 14.4 -- 2.95 -2.63 -- -- -0.454 7.46 25.65 290 13.6 3.33
1387.38 1.74 14.6 -0.794 -- -- -- -- -0.655 -- -- -- -- --
352.2 0.878 14.4 -- 4.48 -- -- -- -0.64 6.94 -- -- -- --
224.96 0.699 14.5 -- -- -4.46 -- -- -0.385 -- 19.97 478 11.6 6.05
1404 1.75 14.5 -- -- -- -- -- -0.567 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 147.57 temperature 25.0 270 > th dose independent rect. 14 3
2 147.95 temperature 25.0 270 > th dose independent rect. 13 5
6 157.09 temperature 10.0 270 > th dose dependent rect. 13 5
7 157.43 temperature 10.0 270 > th dose dependent rect. 12 7
9 157.56 radiation 1.0 270 > th dose independent rect. 14 3
11 158.68 radiation 1.0 270 > th dose independent rect. 13 5
14 159.30 radiation 1.0 270 > th dose independent rect. 13 17
15 159.93 precipitation 0.1 270 < th dose independent rect. 18 19
16 159.93 precipitation 0.1 270 < th dose dependent rect. 18 19
22 161.40 wind 9.0 270 < th dose independent rect. 13 5
37 161.86 temperature 10.0 270 > th dose independent rect. 13 5
39 161.86 atmosphere 1010.0 270 < th dose independent rect. 13 5
41 161.86 temperature 10.0 270 > th dose independent rect. 18 19
43 162.53 precipitation 0.1 270 < th dose independent rect. 17 21
44 162.53 precipitation 0.1 270 < th dose dependent rect. 17 21
46 162.66 precipitation 0.1 270 < th dose independent rect. 13 5
47 162.66 precipitation 0.1 270 < th dose dependent rect. 13 5
49 163.02 wind 9.0 270 < th dose independent rect. 18 19
53 163.26 atmosphere 995.0 270 > th dose independent rect. 18 19
54 163.57 wind 9.0 270 < th dose independent rect. 14 3
56 163.88 temperature 10.0 270 > th dose independent rect. 14 3
58 163.88 atmosphere 1010.0 270 < th dose independent rect. 14 3
60 163.88 temperature 10.0 270 > th dose independent rect. 17 21
62 164.15 humidity 90.0 270 < th dose independent rect. 14 3
63 164.17 wind 1.0 270 > th dose independent rect. 13 5
66 164.54 wind 1.0 270 > th dose independent rect. 14 3
67 164.74 wind 9.0 270 < th dose independent rect. 13 18
68 164.81 precipitation 0.1 270 < th dose independent rect. 7 6
69 164.81 precipitation 0.1 270 < th dose dependent rect. 7 6
70 164.86 temperature 10.0 270 > th dose independent rect. 7 6
71 164.86 atmosphere 995.0 270 > th dose independent rect. 7 6
72 164.86 atmosphere 1015.0 270 < th dose independent rect. 7 6
73 164.86 temperature 10.0 270 > th dose independent rect. 13 18
74 164.98 atmosphere 995.0 270 > th dose independent rect. 13 5
79 165.34 precipitation 0.1 270 < th dose independent rect. 14 3
80 165.34 precipitation 0.1 270 < th dose dependent rect. 14 3
81 165.36 atmosphere 1010.0 270 < th dose independent rect. 12 7
82 165.44 wind 1.0 270 > th dose independent rect. 18 19
83 165.53 wind 9.0 270 < th dose independent rect. 12 7
84 165.80 wind 9.0 270 < th dose independent rect. 7 6
85 165.86 wind 9.0 270 < th dose independent rect. 17 21
86 165.96 precipitation 0.1 270 < th dose independent rect. 19 17
87 165.96 precipitation 0.1 270 < th dose dependent rect. 19 17
88 166.22 temperature 10.0 270 > th dose independent rect. 12 7
91 166.22 temperature 10.0 270 > th dose independent rect. 19 17
92 166.22 atmosphere 995.0 270 > th dose independent rect. 19 17
94 166.59 radiation 1.0 270 > th dose independent rect. 7 6
96 166.71 wind 1.0 270 > th dose independent rect. 7 6
102 166.97 radiation 40.0 270 < th dose independent rect. 14 3
103 166.98 wind 9.0 270 < th dose independent rect. 19 17
110 167.21 wind 9.0 270 < th dose independent rect. 2 15
113 167.38 humidity 50.0 270 > th dose independent rect. 18 19
115 167.45 wind 1.0 270 > th dose independent rect. 18 8
122 167.82 humidity 90.0 270 < th dose independent rect. 13 5
125 167.94 atmosphere 995.0 270 > th dose independent rect. 14 3
128 168.07 radiation 40.0 270 < th dose dependent rect. 17 9
131 168.19 temperature 15.0 270 > th dose independent rect. 2 15
132 168.24 precipitation 0.1 270 < th dose independent rect. 12 7
133 168.24 precipitation 0.1 270 < th dose dependent rect. 12 7
136 168.37 temperature 10.0 270 > th dose independent rect. 17 9
137 168.37 radiation 20.0 270 < th dose independent rect. 17 9
141 168.37 atmosphere 1015.0 270 < th dose independent rect. 2 15
145 168.55 wind 9.0 270 < th dose independent rect. 17 9
147 168.65 atmosphere 995.0 270 > th dose independent rect. 13 18
167 169.43 atmosphere 995.0 270 > th dose independent rect. 12 7
175 169.83 precipitation 0.1 270 < th dose independent rect. 17 9
177 169.83 precipitation 0.1 270 < th dose dependent rect. 17 9
179 169.89 humidity 50.0 270 > th dose independent rect. 19 17
184 169.96 humidity 50.0 270 > th dose independent rect. 17 9
186 170.19 wind 1.0 270 > th dose independent rect. 12 7
192 170.47 atmosphere 995.0 270 > th dose independent rect. 17 21
219 170.95 humidity 50.0 270 > th dose independent rect. 7 6
228 171.25 temperature 10.0 10 > th dose dependent rect. 14 7
231 171.34 precipitation 0.1 270 < th dose independent rect. 13 18
232 171.34 precipitation 0.1 270 < th dose dependent rect. 13 18
262 172.17 radiation 1.0 270 > th dose independent sin 15 NA
280 172.53 radiation 1.0 270 < th dose independent rect. 15 11
282 172.59 radiation 1.0 270 < th dose independent rect. 8 18
286 172.67 atmosphere 995.0 270 > th dose independent rect. 18 8
296 173.02 radiation 1.0 270 < th dose dependent rect. 15 11
309 173.07 precipitation 0.1 270 < th dose independent rect. 2 15
311 173.07 precipitation 0.1 270 < th dose dependent rect. 2 15
315 173.13 radiation 1.0 270 < th dose dependent rect. 8 18
318 173.28 radiation 1.0 270 < th dose dependent sin 16 NA
373 174.33 atmosphere 995.0 270 > th dose independent rect. 2 15
405 174.75 atmosphere 1015.0 270 < th dose independent rect. 18 19
409 174.77 radiation 40.0 90 < th dose independent rect. 14 5
410 174.78 radiation 1.0 270 < th dose independent sin 15 NA
419 174.97 radiation 1.0 270 > th dose independent rect. 18 19
487 176.08 atmosphere 1015.0 270 < th dose independent rect. 19 17
518 176.57 radiation 40.0 270 < th dose independent rect. 23 9
524 176.66 temperature 10.0 270 > th dose independent rect. 23 9
525 176.66 temperature 30.0 270 < th dose independent rect. 23 9
526 176.66 humidity 50.0 270 > th dose independent rect. 23 9
528 176.66 atmosphere 995.0 270 > th dose independent rect. 23 9
529 176.66 temperature 10.0 270 > th dose independent rect. 8 15
532 176.70 wind 9.0 270 < th dose independent rect. 23 9
576 177.54 humidity 50.0 270 > th dose dependent rect. 23 9
586 177.86 wind 1.0 270 > th dose independent rect. 8 17
599 178.13 wind 1.0 270 > th dose dependent rect. 14 3
619 178.64 humidity 50.0 270 > th dose independent rect. 13 5
633 179.24 precipitation 0.1 270 < th dose independent rect. 8 15
634 179.24 precipitation 0.1 270 < th dose dependent rect. 8 15
637 179.30 radiation 40.0 270 < th dose dependent rect. 1 7
640 179.40 wind 9.0 270 < th dose independent rect. 8 15
661 179.81 humidity 50.0 270 > th dose independent rect. 14 3
664 179.83 atmosphere 1015.0 270 < th dose independent rect. 24 8
706 180.27 radiation 40.0 270 < th dose independent rect. 14 17
708 180.35 precipitation 0.1 270 < th dose independent rect. 23 9
709 180.35 precipitation 0.1 270 < th dose dependent rect. 23 9
743 180.70 temperature 30.0 90 < th dose independent rect. 19 8
783 181.33 radiation 40.0 270 < th dose dependent rect. 23 9
908 182.98 precipitation 0.1 10 < th dose independent rect. 14 7
910 182.98 precipitation 0.1 10 < th dose dependent rect. 14 7
915 183.10 atmosphere 995.0 270 > th dose dependent rect. 14 3
925 183.28 atmosphere 995.0 270 > th dose dependent rect. 13 5
948 183.69 temperature 30.0 270 < th dose independent rect. 19 17
950 183.75 wind 9.0 10 < th dose independent rect. 14 6
974 184.27 atmosphere 1015.0 270 < th dose independent rect. 18 7
982 184.37 temperature 10.0 10 > th dose independent rect. 14 6
984 184.37 atmosphere 1010.0 10 < th dose independent rect. 14 6
987 184.37 temperature 10.0 10 > th dose independent rect. 20 18
988 184.37 atmosphere 995.0 10 > th dose independent rect. 20 18
991 184.41 radiation 40.0 10 < th dose independent rect. 14 6