BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0707100 Os11g0707100|Os11g0707100
(366 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G39730.1 | chr2:16570951-16573345 REVERSE LENGTH=475 183 1e-46
AT1G73110.1 | chr1:27494344-27496844 REVERSE LENGTH=433 71 8e-13
>AT2G39730.1 | chr2:16570951-16573345 REVERSE LENGTH=475
Length = 474
Score = 183 bits (465), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 109/220 (49%), Positives = 129/220 (58%), Gaps = 49/220 (22%)
Query: 6 SSTVGAPGSGLVVKNWLRTAGYSHHGGRSRCRCRKIMAMAGGSSKEVDEEKQTEQDRWKG 65
S V AP S + K + + ++ +S K++A V E+KQT+ DRW+G
Sbjct: 23 SGAVSAPASTFLGKKVVTVSRFAQSNKKSNGSF-KVLA--------VKEDKQTDGDRWRG 73
Query: 66 LAYDISDDQQDITRGKGLVDSLFQAPMGDGTHEARVP----------QPGSQNVQPGQHH 115
LAYD SDDQQDITRGKG+VDS+FQAPMG GTH A + Q N+ G +
Sbjct: 74 LAYDTSDDQQDITRGKGMVDSVFQAPMGTGTHHAVLSSYEYVSQGLRQYNLDNMMDGFYI 133
Query: 116 G---------HISKNLMKLPNI-------------QGKSFQCDLVFAKMGINLIMMS--- 150
HI+KN + LPNI QGKSFQC+LV AKMGIN IMMS
Sbjct: 134 APAFMDKLVVHITKNFLTLPNIKVPLILGIWGGKGQGKSFQCELVMAKMGINPIMMSAGE 193
Query: 151 -----AGEPAKLIRQRYREAADMINKGKMCVLFINDLDAG 185
AGEPAKLIRQRYREAAD+I KGKMC LFINDLDAG
Sbjct: 194 LESGNAGEPAKLIRQRYREAADLIKKGKMCCLFINDLDAG 233
Score = 135 bits (340), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 72/132 (54%), Positives = 83/132 (62%), Gaps = 34/132 (25%)
Query: 269 IDFFGALRARVYGDEVRRWVAEIGVENIGRRL---------------------------- 300
IDFFGALRARVY DEVR++V +GVE IG+RL
Sbjct: 342 IDFFGALRARVYDDEVRKFVESLGVEKIGKRLVNSREGPPVFEQPEMTYEKLMEYGNMLV 401
Query: 301 ---ENVKRVRLADKYLSEAALGDANHDS---GEFYGKAEQQSPVPVPAGCTDQRAANYDP 354
ENVKRV+LA+ YLS+AALGDAN D+ G FYGK QQ +PVP GCTD A N+DP
Sbjct: 402 MEQENVKRVQLAETYLSQAALGDANADAIGRGTFYGKGAQQVNLPVPEGCTDPVAENFDP 461
Query: 355 TARSDDGSCVYN 366
TARSDDG+CVYN
Sbjct: 462 TARSDDGTCVYN 473
>AT1G73110.1 | chr1:27494344-27496844 REVERSE LENGTH=433
Length = 432
Score = 71.2 bits (173), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 42/92 (45%), Positives = 55/92 (59%), Gaps = 23/92 (25%)
Query: 117 HISKNLM------KLPNI--------QGKSFQCDLVFAKMGINLIMMS--------AGEP 154
HI KN + K+P I QGK+FQ +L+F MG+ ++MS AGEP
Sbjct: 149 HIVKNYLAPSLNIKIPLILGIWGGKGQGKTFQTELIFKTMGVEPVIMSAGELESDRAGEP 208
Query: 155 AKLIRQRYREAADMI-NKGKMCVLFINDLDAG 185
+LIR RYR A+ +I N+GKM VL IND+DAG
Sbjct: 209 GRLIRDRYRTASQVIQNQGKMSVLMINDIDAG 240
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.135 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,223,200
Number of extensions: 345122
Number of successful extensions: 790
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 784
Number of HSP's successfully gapped: 4
Length of query: 366
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 266
Effective length of database: 8,364,969
Effective search space: 2225081754
Effective search space used: 2225081754
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 112 (47.8 bits)